aboutsummaryrefslogtreecommitdiff
path: root/docs
AgeCommit message (Collapse)AuthorFilesLines
2020-05-11Add analytical solution for DFOP-SFOJohannes Ranke8-10/+21
This is about twice as fast as deSolve compiled in the case of FOCUS D
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke21-535/+607
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-07Another overhaul of analytical solutionsJohannes Ranke19-125/+359
Still in preparation for analytical solutions of coupled models
2020-05-07Merge parent solutions to one fileJohannes Ranke7-7/+47
- Combine R/*.solution.R into R/parent_solutions.R - Create a roxygen family of related functions - Reduce redundancy by using the inherit tag - Change the parent.0 argument to parent_0 to match the corresponding parameter name used in mkinfit
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke26-798/+1157
2020-04-20Prepare release to address failed CRAN checkJohannes Ranke8-35/+38
2020-04-18Avoid assignment to .GlobalEnv for CRANJohannes Ranke4-6/+191
2020-04-17Advertise nlme related functionalityJohannes Ranke1-0/+1
2020-04-17News entry, static documentation rebuilt by pkgdownJohannes Ranke1-0/+1
2020-04-15Adapt endpoint() to also work for nlme.mmkin objectsJohannes Ranke3-11/+49
2020-04-15Include random effects in starting parametersJohannes Ranke17-84/+200
- mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO
2020-04-15A plot method for nlme.mmkin fitsJohannes Ranke7-16/+599
2020-04-14Keep order of datasets in nlme_data, add a plotJohannes Ranke2-2/+34
2020-04-10Improve nlme function docsJohannes Ranke12-31/+119
2020-04-04Static documentation rebuilt by pkgdownJohannes Ranke6-11/+221
2020-04-03Compiled models article, reduce distractionsJohannes Ranke4-115/+85
- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
2020-03-31Update NEWS, static documentation rebuilt by pkgdownv0.9.49.9Johannes Ranke1-1/+2
2020-03-31Use inline documentation for R6 class mkindsJohannes Ranke2-26/+44
2020-03-30Static documentation rebuilt by pkgdownJohannes Ranke23-217/+365
2020-01-09Remove unused FME package from DESCRIPTION textJohannes Ranke7-12/+11
2020-01-08Typos in NEWS, update static docsJohannes Ranke1-1/+1
2019-12-16Argument ymax for plot.mmkinJohannes Ranke1-2/+6
2019-12-10More additions to the READMEJohannes Ranke1-1/+1
2019-12-10Update and amend the READMEJohannes Ranke1-2/+20
2019-12-09Consistently use "two-component error model"Johannes Ranke2-5/+5
instead of "two component error model"
2019-11-13Improve formatting using markdownJohannes Ranke1-6/+6
2019-11-13Improve READMEJohannes Ranke1-3/+3
2019-11-13Calculate Akaike weightsJohannes Ranke4-0/+224
2019-11-13Likelihood ratio test for mmkin columns with two fitsJohannes Ranke2-3/+7
2019-11-09Add a lack-of-fit testJohannes Ranke9-0/+353
- Switch an example dataset in the test setup to a dataset with replicates, adapt tests - Skip the test for lrtest with an update specification as it does not only fail when pkgdown generates static help pages, but also in testthat
2019-11-05Fix standardized residual plots in 'plot_res'Johannes Ranke2-4/+5
2019-11-04Static documentation rebuilt by pkgdownJohannes Ranke9-16/+32
2019-11-04Include fixed parameters in model names in lrtestJohannes Ranke3-18/+37
2019-11-01Another documentation fixJohannes Ranke1-5/+4
2019-11-01Make the 'quadratic' the default for 'confint'Johannes Ranke13-402/+118
Also the documentation was improved here and there
2019-11-01Update link, increase tolerance of a test for Travisv0.9.49.7Johannes Ranke1-1/+1
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke78-2255/+264
2019-10-31Comment out example code that fails in pkgdownJohannes Ranke1-1/+6
2019-10-31Add likelihood ratio test and other methods, fixesJohannes Ranke10-49/+1239
The likelihood ratio test method is lrtest, in addition, methods for update and residuals were added.
2019-10-29Return single parameters correctly from confintJohannes Ranke1-11/+22
Static documentation rebuilt by pkgdown
2019-10-28Parallel computation for confidence intervalsJohannes Ranke1-10/+113
Only on Linux at the moment. Some more examples in the help page. Remove the distribution argument for the quadratic method
2019-10-28Improve formattingJohannes Ranke1-2/+2
2019-10-28Fix the cutoff for likelihood based intervalsJohannes Ranke1-9/+22
The cutoff now matches what is given by Venzon and Moolgavkar (1988). Also, confidence intervals closely match intervals obtained with stats4::confint in the test case where an stats4::mle object is created from the likelihood function in one test case. Static documentation rebuilt by pkgdown
2019-10-26Fix checks and testsJohannes Ranke5-6/+477
Static documentation rebuilt by pkgdown
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke48-1277/+1275
2019-10-21Quote percent signs in Rhelp filesJohannes Ranke2-16/+14
Static documentation rebuilt by pkgdown
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke7-32/+38
2019-10-21Improve some plotting routines, more testsJohannes Ranke8-21/+44
Static documentation rebuilt by pkgdown
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke2-9/+0
2019-10-21Improve tests, remove geometric_meanJohannes Ranke1-194/+0

Contact - Imprint