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2022-03-08Avoid using multiple processes on CRAN check machinesJohannes Ranke1-1/+1
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke94-841/+823
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-03Update link to 2,4-D dataJohannes Ranke3-2/+2
2022-03-02Make tests more platform independent, update docsJohannes Ranke217-15445/+31301
2022-02-28Update docsJohannes Ranke56-17941/+18863
2022-02-08Merge branch 'nlmixr'Johannes Ranke231-1671/+16778
2022-01-11Update static docsnlmixrJohannes Ranke20-9255/+12062
2021-10-05Update docsJohannes Ranke17-1569/+10190
2021-10-01Update online docs to 1.0.5Johannes Ranke15-42/+46
2021-09-29Reduce noise in nlmixr.mmkin output in examplesJohannes Ranke4-4143/+49
2021-09-27intervals() methods, more DFOP/tc variantsJohannes Ranke19-64/+684
2021-09-17Put the AIC comparison in a subsubsectionJohannes Ranke2-22/+26
2021-09-16Adapt and improve the dimethenamid vignetteJohannes Ranke38-352/+375
Adapt to the corrected data and unify control parameters for saemix and nlmixr with saem. Update docs
2021-08-04Improve AIC table in vignetteJohannes Ranke10-58/+70
2021-07-29Add citations to the DESCRIPTIONJohannes Ranke3-4/+9
2021-07-29Go back to 1.0.x version, update docsJohannes Ranke23-93/+99
2021-07-29Merge branch 'master' into nlmixrJohannes Ranke3-3/+8
2021-07-29Add publication to README, update docsJohannes Ranke3-3/+8
2021-07-27Fix dimethenamid vignette problems and update docsJohannes Ranke43-1034/+1003
2021-07-27Merge branch 'master' into nlmixrJohannes Ranke23-7/+7
2021-07-27Publication date for 1.0.4 in NEWS, update docsJohannes Ranke23-7/+7
2021-06-22Update development version of online docsJohannes Ranke7-9289/+1018
2021-06-11Finished 'summary.nlmixr.mmkin', checks, docsJohannes Ranke47-456/+15514
2021-04-21Merge branch 'master' into saemixJohannes Ranke120-111/+217
2021-04-21Version 1.0.4 published yesterdayv1.0.4Johannes Ranke16-5/+7
2021-03-31Bug fix in plot.mkinfitJohannes Ranke120-109/+213
In residual plots, use xlab and xlim if appropriate
2021-03-09Some improvements for borderline casesJohannes Ranke32-357/+358
- fit_with_errors for saem() - test_log_parms for mean_degparms() and saem()
2021-02-24Merge branch 'master' into saemixJohannes Ranke2-3/+3
2021-02-24Clarify version status in NEWSJohannes Ranke2-3/+3
2021-02-24Merge branch 'master' into saemixJohannes Ranke13-9/+17
2021-02-24Rebuild docsJohannes Ranke13-9/+17
2021-02-18Merge branch 'master' into saemixJohannes Ranke8-127/+83
2021-02-15Don't let pkgdown add release datesJohannes Ranke2-95/+50
It didn't pick up the release of 1.0.3, and most of the other release dates were duplicated.
2021-02-15Correct grant numbers in README, update docsJohannes Ranke7-33/+34
2021-02-15Fully rebuild docs, rerun tests and checkJohannes Ranke176-703/+983
2021-02-15Merge branch 'master' into saemixJohannes Ranke177-567/+815
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke177-567/+815
Also bump version to 1.0.3.
2021-02-13Update static docsJohannes Ranke2-6/+16
2021-02-13Rebuild docsJohannes Ranke1-1/+1
2021-02-13Update docsJohannes Ranke11-41/+49
2021-02-13Merge branch 'master' into saemixJohannes Ranke13-10/+18
Run make testcheck to regenerate logs with merge conflicts
2021-02-13Update for gmkin 0.6.12v1.0.2Johannes Ranke13-10/+18
mkinfit: Keep model names stored in mkinmod objects, avoiding their loss in gmkin
2021-02-06Reintroduce interface to saemixJohannes Ranke36-511/+559
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-02-06Increase test tolerance for parameter comparisonsv1.0.1Johannes Ranke2-1/+2
Platform dependence also revealed after upgrade to bullseye
2021-02-06Update static docsJohannes Ranke2-90/+91
2021-02-04Documentation improvements, mainly fixing example codeJohannes Ranke21-127/+166
The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke177-1690/+4908
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2021-01-25Change default ylab in plot.mkinfit, explicit ylab for plot.mmkinJohannes Ranke19-34/+28
See NEWS.md. Closes #12
2021-01-11Rebuild docsJohannes Ranke8-64/+86
2020-12-21plot.mixed: Possibility to overlay predictionsJohannes Ranke6-35/+47

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