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2022-10-05Simplify the removal of random effectsJohannes Ranke1-1/+1
This is achieved by introducing the argument 'no_random_effect' to the saem function.
2022-09-28Update vignette and static docsJohannes Ranke5-19/+44
2022-09-19Improve parhist and llhistJohannes Ranke6-18/+13
In particular, adapt the display of parameter boxplots for saem fits using mkin transformations to the way used for saem fits using saemix transformations, i.e. always show parameters on the natural scale, and normalised them by dividing by the median from the multiple runs.
2022-09-16Add llhist to the multistart vignetteJohannes Ranke3-1/+9
2022-09-16Improve multistart documentation, bugfixJohannes Ranke14-27/+576
- Split out llhist and parhist documentation - Add example code for multistart - Create a multistart vignette, because the example code fails when run by pkgdown - Fix multistart for the case of mkin transformations in the saem fit
2022-09-16Improve docs and update pkgdownJohannes Ranke16-414/+526
2022-08-10Update dev docsJohannes Ranke2-2/+2
2022-08-10Change dev branch used for docs, update static docsJohannes Ranke73-4156/+5578
2022-08-10Update docsJohannes Ranke3-262/+348
2022-08-10Update static docsJohannes Ranke15-277/+655
2022-07-22Update static docsJohannes Ranke13-50/+648
2022-07-12Rerun benchmarks on desktop computerJohannes Ranke2-2/+31
2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke11-649/+673
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-07-01Sensitivity of AIC values in DMTA vignette to BLAS versionJohannes Ranke8-145/+190
2022-07-01Update benchmark article in online docsJohannes Ranke2-65/+65
2022-07-01Add R version to data in benchmark vignetteJohannes Ranke12-263/+434
2022-06-30Merge branch 'dmta_vignette'Johannes Ranke12-24/+35
2022-06-30Remove stray sentence from vignette, update docsJohannes Ranke19-28/+32
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke133-953/+964
This also adds the first benchmark results obtained on my laptop system
2022-04-11Update static docsJohannes Ranke16-12/+34
2022-03-16Use saemix in help page, typo in vignetteJohannes Ranke12-63/+155
2022-03-14Reduce check time for CRAN, releasev1.1.0Johannes Ranke7-17/+21
2022-03-09Fix link to saem.mmkin from READMEJohannes Ranke2-2/+2
Thanks to Uwe Ligges for spotting this inmidst of a lot of ambiguous URL check results.
2022-03-08Avoid using multiple processes on CRAN check machinesJohannes Ranke1-1/+1
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke94-841/+823
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-03Update link to 2,4-D dataJohannes Ranke3-2/+2
2022-03-02Make tests more platform independent, update docsJohannes Ranke217-15445/+31301
2022-02-28Update docsJohannes Ranke56-17941/+18863
2022-02-08Merge branch 'nlmixr'Johannes Ranke231-1671/+16778
2022-01-11Update static docsnlmixrJohannes Ranke20-9255/+12062
2021-10-05Update docsJohannes Ranke17-1569/+10190
2021-10-01Update online docs to 1.0.5Johannes Ranke15-42/+46
2021-09-29Reduce noise in nlmixr.mmkin output in examplesJohannes Ranke4-4143/+49
2021-09-27intervals() methods, more DFOP/tc variantsJohannes Ranke19-64/+684
2021-09-17Put the AIC comparison in a subsubsectionJohannes Ranke2-22/+26
2021-09-16Adapt and improve the dimethenamid vignetteJohannes Ranke38-352/+375
Adapt to the corrected data and unify control parameters for saemix and nlmixr with saem. Update docs
2021-08-04Improve AIC table in vignetteJohannes Ranke10-58/+70
2021-07-29Add citations to the DESCRIPTIONJohannes Ranke3-4/+9
2021-07-29Go back to 1.0.x version, update docsJohannes Ranke23-93/+99
2021-07-29Merge branch 'master' into nlmixrJohannes Ranke3-3/+8
2021-07-29Add publication to README, update docsJohannes Ranke3-3/+8
2021-07-27Fix dimethenamid vignette problems and update docsJohannes Ranke43-1034/+1003
2021-07-27Merge branch 'master' into nlmixrJohannes Ranke23-7/+7
2021-07-27Publication date for 1.0.4 in NEWS, update docsJohannes Ranke23-7/+7
2021-06-22Update development version of online docsJohannes Ranke7-9289/+1018
2021-06-11Finished 'summary.nlmixr.mmkin', checks, docsJohannes Ranke47-456/+15514
2021-04-21Merge branch 'master' into saemixJohannes Ranke120-111/+217
2021-04-21Version 1.0.4 published yesterdayv1.0.4Johannes Ranke16-5/+7
2021-03-31Bug fix in plot.mkinfitJohannes Ranke120-109/+213
In residual plots, use xlab and xlim if appropriate
2021-03-09Some improvements for borderline casesJohannes Ranke32-357/+358
- fit_with_errors for saem() - test_log_parms for mean_degparms() and saem()

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