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2019-05-08Add functionality to plot the error modelJohannes Ranke26-87/+360
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-07Fix hessian calculationsJohannes Ranke22-902/+940
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke26-1047/+998
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke42-565/+575
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Remove reference to archived kinfit packageJohannes Ranke10-70/+63
from vignettes/mkin.Rmd Static documentation rebuilt by pkgdown
2019-05-02Prepare for CRAN releaseJohannes Ranke10-65/+63
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-05-02Better initials for error model parametersJohannes Ranke70-397/+401
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke102-1798/+1863
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-03-04Make some example output more reproducibleJohannes Ranke14-903/+159
In order to avoid some unnecessary documentation rebuilds
2019-03-04Review tests and examples based on winbuilder resultsJohannes Ranke23-608/+651
Static documentation rebuilt by pkgdown
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke59-79/+262
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke40-99/+1275
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke18-88/+343
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke60-146/+156
2019-02-25Add plotting tests, add nafta to pkgdownJohannes Ranke15-90/+96
2019-02-22Implement the NAFTA evaluation schemeJohannes Ranke18-89/+910
2019-02-22Static documentation rebuilt by pkgdownJohannes Ranke15-91/+92
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke12-81/+82
to get the codecov badge into the docs
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke55-161/+160
2019-02-21Make example logistic fit quietJohannes Ranke12-130/+84
2019-02-21Add the logistic modelJohannes Ranke19-101/+403
2019-01-31Restore NAMESPACEJohannes Ranke35-150/+2292
which was accidentally overwritten by pkgdown -> roxygen
2019-01-31Correct title for CAKE_exportJohannes Ranke7-34/+35
Add NEWS entry. Static documentation rebuilt by pkgdown
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke57-3119/+1236
2018-11-26Include AIC.mmkin to static docsJohannes Ranke11-80/+86
Static documentation rebuilt by pkgdown
2018-11-26Add AIC method for mmkin column objectsJohannes Ranke13-86/+305
Static documentation rebuilt by pkgdown
2018-11-26Further improvement of the logLik.mkinfit helpJohannes Ranke11-82/+86
Static documentation rebuilt by pkgdown
2018-11-26Static documentation rebuilt by pkgdownJohannes Ranke11-80/+108
2018-11-26Support logLik and AIC for manual weightsJohannes Ranke16-88/+92
Static documentation rebuilt by pkgdown
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke10-75/+75
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke17-96/+308
2018-09-18Static documentation rebuilt by pkgdownJohannes Ranke11-104/+145
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke51-157/+168
2018-09-14Skip more tests on CRANv0.9.47.5Johannes Ranke11-90/+82
Static documentation rebuilt by pkgdown
2018-09-14Skip some more tests on CRANJohannes Ranke10-80/+80
Static documentation rebuilt by pkgdown
2018-09-14Update NEWSJohannes Ranke12-88/+98
Static documentation rebuilt by pkgdown
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke63-252/+785
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-14Exclude more example code from CRAN checksJohannes Ranke61-227/+1335
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
2018-09-14Static documentation rebuilt by pkgdownJohannes Ranke51-122/+133
Also update test log
2018-09-07Remove help page left after correctionJohannes Ranke1-194/+0
Unfortunately google points at this page when looking for the two component error model of Rocke and Lorenzato, while this outdated page really describes a simplified version...
2018-09-06Fixed publication date in NEWS, docs rebuiltJohannes Ranke9-48/+48
2018-09-06Static documentation rebuilt by pkgdownJohannes Ranke15-280/+281
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke52-135/+357
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-06-06Static documentation rebuilt by pkgdown 1.1.0Johannes Ranke86-949/+2041
2018-03-21Static documentation rebuilt by pkgdownJohannes Ranke14-69/+71
2018-03-12Fix date in latest NEWS entryJohannes Ranke1-2/+2
2018-03-11Static docs rebuilt again, with current pkgdownJohannes Ranke56-158/+1254
2018-03-11Adapt usage section in help for old dataset to lazy loadingJohannes Ranke6-10/+10
Rebuild pkgdown reference
2018-03-09Another rebuild of the static docsJohannes Ranke91-388/+88
Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01Static documentation rebuilt using current pkgdown::build_site()Johannes Ranke134-2478/+1117

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