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2023-01-28Update saem benchmark with new CPUJohannes Ranke2-22/+123
2023-01-28Some improvements to the READMEJohannes Ranke2-3/+3
2023-01-28Build online HTML versions of prebuilt vignettesJohannes Ranke38-40/+9994
Also, give some structure to the menu for selecting articles
2023-01-09Prebuilt PDF vignettes, summary_listingJohannes Ranke32-33/+2836
2022-12-15List random effects correlations in output if anyJohannes Ranke9-258/+377
Update docs
2022-12-02Update online docsJohannes Ranke2-2/+2
2022-12-02Update online docsJohannes Ranke7-14/+95
2022-11-24Start online docs of the development versionJohannes Ranke178-8343/+7032
2022-11-18Use cluster with two cores to reduce windows check timeJohannes Ranke2-2/+3
2022-11-18Update docsJohannes Ranke14-18/+279
2022-11-17Complete update of online docs for v1.2.0Johannes Ranke160-4181/+7909
2022-11-16Update docsJohannes Ranke3-7/+10
2022-11-16Update online docsJohannes Ranke6-127/+183
2022-11-15Import saemix for easier profiling, update online docsJohannes Ranke7-37/+52
2022-11-14Add saem benchmarks to indexJohannes Ranke6-6/+21
2022-11-14Update online docsJohannes Ranke34-1704/+1760
2022-11-03Update docsJohannes Ranke6-1/+333
2022-11-01Update online docsJohannes Ranke29-176/+275
2022-10-29Merge branch 'update_online_docs_v1.1.1'Johannes Ranke1-56/+62
2022-10-29Rebuild vignette with rbenchmark installedJohannes Ranke1-56/+62
2022-10-29Update multistart docsJohannes Ranke18-25/+376
2022-10-26Update multistart example code and vignetteJohannes Ranke11-23/+35
2022-10-26Don't test parhist and llhist on travis, docsJohannes Ranke16-66/+722
2022-10-05Simplify the removal of random effectsJohannes Ranke1-1/+1
This is achieved by introducing the argument 'no_random_effect' to the saem function.
2022-09-28Update vignette and static docsJohannes Ranke5-19/+44
2022-09-19Improve parhist and llhistJohannes Ranke6-18/+13
In particular, adapt the display of parameter boxplots for saem fits using mkin transformations to the way used for saem fits using saemix transformations, i.e. always show parameters on the natural scale, and normalised them by dividing by the median from the multiple runs.
2022-09-16Add llhist to the multistart vignetteJohannes Ranke3-1/+9
2022-09-16Improve multistart documentation, bugfixJohannes Ranke14-27/+576
- Split out llhist and parhist documentation - Add example code for multistart - Create a multistart vignette, because the example code fails when run by pkgdown - Fix multistart for the case of mkin transformations in the saem fit
2022-09-16Improve docs and update pkgdownJohannes Ranke16-414/+526
2022-08-10Update dev docsJohannes Ranke2-2/+2
2022-08-10Change dev branch used for docs, update static docsJohannes Ranke73-4156/+5578
2022-08-10Update docsJohannes Ranke3-262/+348
2022-08-10Update static docsJohannes Ranke15-277/+655
2022-07-22Update static docsJohannes Ranke13-50/+648
2022-07-12Rerun benchmarks on desktop computerJohannes Ranke2-2/+31
2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke11-649/+673
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-07-01Sensitivity of AIC values in DMTA vignette to BLAS versionJohannes Ranke8-145/+190
2022-07-01Update benchmark article in online docsJohannes Ranke2-65/+65
2022-07-01Add R version to data in benchmark vignetteJohannes Ranke12-263/+434
2022-06-30Merge branch 'dmta_vignette'Johannes Ranke12-24/+35
2022-06-30Remove stray sentence from vignette, update docsJohannes Ranke19-28/+32
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke133-953/+964
This also adds the first benchmark results obtained on my laptop system
2022-04-11Update static docsJohannes Ranke16-12/+34
2022-03-16Use saemix in help page, typo in vignetteJohannes Ranke12-63/+155
2022-03-14Reduce check time for CRAN, releasev1.1.0Johannes Ranke7-17/+21
2022-03-09Fix link to saem.mmkin from READMEJohannes Ranke2-2/+2
Thanks to Uwe Ligges for spotting this inmidst of a lot of ambiguous URL check results.
2022-03-08Avoid using multiple processes on CRAN check machinesJohannes Ranke1-1/+1
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke94-841/+823
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-03Update link to 2,4-D dataJohannes Ranke3-2/+2
2022-03-02Make tests more platform independent, update docsJohannes Ranke217-15445/+31301

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