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2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke43-169/+169
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke10-66/+66
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke10-68/+68
2016-06-28Avoid multicore fits in vignettes for passing CRAN checksJohannes Ranke50-551/+1331
Also a small fix to the FOCUS Z vignette, and an update of the static documentation generated by staticdocs.
2016-03-24Static documentation rebuilt by staticdocs::build_site()v0.9.42Johannes Ranke42-223/+230
2016-03-24Address feedback from CRAN submissionJohannes Ranke36-104/+104
- Put the CRAN URL that the badge points to into canonical form. I had missed the requirement to use the canonical form before, as the R CMD check message complained about a (possibily) invalid URL, so I overlooked the explanation later in the check log. Thanks to Uwe for his patience. Fix checked with winbuilder. - Slightly reduced the build time for the compiled_models vignette by skipping the warm-up. 3 repetitions are necessary for the autoplot method to work
2016-03-23Static documentation rebuilt by staticdocs::build_site()Johannes Ranke10-45/+45
2016-03-23Added 'from_max_mean' to 'mkinfit'.Johannes Ranke42-162/+170
- Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel
2015-12-09Static documentation rebuilt by staticdocs::build_site()Johannes Ranke12-72/+56
2015-11-13Add plots to compiled_models vignette, rebuild staticdocsJohannes Ranke42-147/+158
2015-11-09Update staticdocsv0.9-41Johannes Ranke10-89/+62
2015-11-09Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke11-28/+191
r-forge
2015-11-09Rebuild vignettes and static documentationJohannes Ranke61-0/+16319
2015-10-19Add the R6 class mkindsJohannes Ranke1-0/+1
2015-06-24Staticdocs site_path argument in build_site() now worksJohannes Ranke1-2/+0
This long-standing issue finally got fixed in 2f56137fc9ba60bfea54e575d233f4e696bb8a5a
2015-05-19Typo in dummy fileJohannes Ranke1-1/+1
2015-05-14Start of migration from RUnit to testthatJohannes Ranke4-390/+0
2014-08-25Bug fix and unit tests for mkinerrminJohannes Ranke2-37/+63
See NEWS.md for details
2014-07-02Support formation fractions without sink pathway, updatesJohannes Ranke1-47/+16
2014-06-26Calculate additional DT50 values for non-SFO modelsJohannes Ranke1-12/+12
2014-05-08Support building static documentation, build itJohannes Ranke1-0/+2
2014-05-07Fork the GUI into package gmkin. See ChangeLog for detailsJohannes Ranke3-930/+0
2014-05-05Update initials selection, separate out handler functionJohannes Ranke1-4/+10
- Write a separate handler function for the Configure button for easier debugging - Update the selection combobox for initial values after pressing the Keep fit button
2014-05-02More polishing, update plot options in fit selectorJohannes Ranke1-14/+28
2014-05-02Rearrange initialisation of workspace and metadataJohannes Ranke1-63/+34
2014-05-02Improve formattingJohannes Ranke1-1/+2
2014-05-02Plot parameter confidence intervalsJohannes Ranke1-3/+14
2014-04-30Overhaul of gmkin - should be useful nowJohannes Ranke1-59/+161
- Improve widget layout + Size of widgets in left pane + Enable scrolling in left pane + Smaller plot + Control width of summary text file - Upload of data with flexible format - Parameter transformation is now optional - Get initial values from selected previous fit - Fix initial plots for the case of zero parameter values
2014-04-28Option to add residual plot to plot.mkinfitJohannes Ranke1-9/+2
2014-04-28Fix uploading of workspace filesJohannes Ranke1-0/+3
2014-04-28Complete the introduction of plot optionsJohannes Ranke1-24/+27
2014-04-26New layout for plotting and fitting, add residual plotJohannes Ranke1-122/+92
2014-03-21Small variation to last commit, in reality fixes #2Johannes Ranke1-1/+1
2014-03-21Update interval variabel list on saving a dataset, fixes #1Johannes Ranke1-0/+1
2014-02-27Format of gmkin workspace files, copyright, updatesJohannes Ranke2-33/+60
- Change the format of the workspace files of gmkin so they can be distributed in the mkin package - Add gmkin workspace datasets FOCUS_2006_gmkin and FOCUS_2006_Z_gmkin - Restrict the unit test with the Schaefer data to parent and primary metabolites as formation fraction and DT50 for A2 are higly correlated and passing the test is platform dependent. For example, the test fails in 1 out of 14 platforms on CRAN as of today - Add Eurofins Regulatory AG copyright notices - Import FME and deSolve instead of depending on them to have cleaner startup
2013-11-18Add GUI start function, keep GUI here in mkinJohannes Ranke3-4/+2
2013-11-13Squashed commit of the following:jranke1-4/+48
commit d8dbf2ad866fb9d34cd1100000b9c116219ecef6 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 22:09:41 2013 +0100 Add possibility to control more mkinfit arguments from the GUI commit 8f1bae2142b37a0ff6b8989b2d1569686937f68e Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 20:30:11 2013 +0100 Add initial weighting choice to GUI commit c99b5c298713a7c14e8ab5604c68613d0b7af27a Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 16:25:31 2013 +0100 Update of TODO from git bash on Windows commit 8bf2a6f8f6bd752433f06b26b5da334e958f5166 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 16:00:01 2013 +0100 Update of README using TortoiseGit git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@162 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11- Add a simple makefilejranke1-1/+0
- Add a .Rbuildignore file - Clean up unit tests a bit - Test the gwidgets notebook from the knitr demo git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@150 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-09GUI: Fixed a bug that occurred when deleting the last fit from the fit listjranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@149 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-07- Added additional plots, including residual plotsjranke1-7/+75
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@148 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06GUI:jranke1-19/+30
- Uploading of text files works - The current summary is always shown git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@144 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06Start to enable the import of CSV files.jranke1-0/+31
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@143 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06- New candidate for release containing the latest changes to the GUIjranke5-724/+100
- Checking and releasing myself as r-forge has a stuffed build pipeline git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@139 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-04- Now the eigenvalue based solution for FOCUS 2006 D works flawlessly withjranke1-20/+2
default starting parameters - Took out a relatively long-lasting test that did not say much git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@136 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-04Fixing parameters (initial state and differential equation parameters) nowjranke1-6/+12
also works in the experimental GUI git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@134 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-30Fits can now be saved in the project file in the experimental GUI, and ↵jranke1-15/+39
reloaded from it, together with the datasets and models. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@131 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-30Improved fit management in the experimental GUIjranke1-47/+99
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@130 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-29- Just one little formatting change in mkinfit.Rjranke1-5/+128
- Some very basic fitting now works in the experimental GUI with the new widget layout git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@128 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-28Make the left pane in the new experimental GUI layout smaller and the study ↵jranke1-12/+9
data simpler as editing study details is not the purpose of the GUI git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@127 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-25A new layout for the GUI and an update of the staticdocs, as I just jranke1-0/+445
uploaded 0.9-22 for publication on CRAN git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@125 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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