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2020-11-13Fixes for f_time_norm_focus, still very fragile...Johannes Ranke1-6/+8
2020-11-12Use preprocessed data for 2,4-D, update docsJohannes Ranke1-27/+27
2020-11-12mkindsg class to hold groups of datasetsJohannes Ranke2-0/+82
- D24_2014 dataset on aerobic soil degradation of 2,4-D from the EU assessment as mkindsg object with metadata - f_time_norm_focus() to do time-step normalisation using the FOCUS method - focus_soil_moisture data with default moisture contents at pF1, pF 2 and pF 2.5 for USDA soil types from FOCUS GW guidance - Dataset generation scripts in inst/dataset_generation - Depend on R >= 2.15.1 in order to facilitate the use of utils::globalVariables()
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-0/+219
2019-07-08Support summarizing older fitsJohannes Ranke1-0/+0
generated with mkin < 0.9.49.5
2019-05-02Prepare for CRAN releaseJohannes Ranke1-0/+0
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-05-02Better initials for error model parametersJohannes Ranke1-0/+0
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-0/+0
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-01-31Restore NAMESPACEJohannes Ranke1-1/+0
which was accidentally overwritten by pkgdown -> roxygen
2016-11-17Satisfy CRAN checks, also on R-develJohannes Ranke1-63/+0
- Use https for canonical R URLs - Update CAKE URL to one giving a valid SSL certificate
2016-10-06Remove staticdocs from old locationJohannes Ranke70-17199/+0
2016-09-10Static documentation rebuilt with current staticdocsJohannes Ranke10-66/+66
Using hadley/staticdocs commit #8c1069d from 8 days ago
2016-09-10Static documentation rebuilt by staticdocs::build_site()Johannes Ranke43-189/+206
2016-06-28Bump version for new release, rebuild static docsJohannes Ranke42-159/+159
The test test_FOMC_ill-defined leads to errors on several architectures/distributions, as apparent from CRAN checks, so we need a new release. Static documentation rebuilt by staticdocs::build_site()
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke43-169/+169
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke10-66/+66
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke10-68/+68
2016-06-28Avoid multicore fits in vignettes for passing CRAN checksJohannes Ranke50-551/+1331
Also a small fix to the FOCUS Z vignette, and an update of the static documentation generated by staticdocs.
2016-03-24Static documentation rebuilt by staticdocs::build_site()v0.9.42Johannes Ranke42-223/+230
2016-03-24Address feedback from CRAN submissionJohannes Ranke36-104/+104
- Put the CRAN URL that the badge points to into canonical form. I had missed the requirement to use the canonical form before, as the R CMD check message complained about a (possibily) invalid URL, so I overlooked the explanation later in the check log. Thanks to Uwe for his patience. Fix checked with winbuilder. - Slightly reduced the build time for the compiled_models vignette by skipping the warm-up. 3 repetitions are necessary for the autoplot method to work
2016-03-23Static documentation rebuilt by staticdocs::build_site()Johannes Ranke10-45/+45
2016-03-23Added 'from_max_mean' to 'mkinfit'.Johannes Ranke42-162/+170
- Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel
2015-12-09Static documentation rebuilt by staticdocs::build_site()Johannes Ranke12-72/+56
2015-11-13Add plots to compiled_models vignette, rebuild staticdocsJohannes Ranke42-147/+158
2015-11-09Update staticdocsv0.9-41Johannes Ranke10-89/+62
2015-11-09Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke11-28/+191
r-forge
2015-11-09Rebuild vignettes and static documentationJohannes Ranke61-0/+16319
2015-10-19Add the R6 class mkindsJohannes Ranke1-0/+1
2015-06-24Staticdocs site_path argument in build_site() now worksJohannes Ranke1-2/+0
This long-standing issue finally got fixed in 2f56137fc9ba60bfea54e575d233f4e696bb8a5a
2015-05-19Typo in dummy fileJohannes Ranke1-1/+1
2015-05-14Start of migration from RUnit to testthatJohannes Ranke4-390/+0
2014-08-25Bug fix and unit tests for mkinerrminJohannes Ranke2-37/+63
See NEWS.md for details
2014-07-02Support formation fractions without sink pathway, updatesJohannes Ranke1-47/+16
2014-06-26Calculate additional DT50 values for non-SFO modelsJohannes Ranke1-12/+12
2014-05-08Support building static documentation, build itJohannes Ranke1-0/+2
2014-05-07Fork the GUI into package gmkin. See ChangeLog for detailsJohannes Ranke3-930/+0
2014-05-05Update initials selection, separate out handler functionJohannes Ranke1-4/+10
- Write a separate handler function for the Configure button for easier debugging - Update the selection combobox for initial values after pressing the Keep fit button
2014-05-02More polishing, update plot options in fit selectorJohannes Ranke1-14/+28
2014-05-02Rearrange initialisation of workspace and metadataJohannes Ranke1-63/+34
2014-05-02Improve formattingJohannes Ranke1-1/+2
2014-05-02Plot parameter confidence intervalsJohannes Ranke1-3/+14
2014-04-30Overhaul of gmkin - should be useful nowJohannes Ranke1-59/+161
- Improve widget layout + Size of widgets in left pane + Enable scrolling in left pane + Smaller plot + Control width of summary text file - Upload of data with flexible format - Parameter transformation is now optional - Get initial values from selected previous fit - Fix initial plots for the case of zero parameter values
2014-04-28Option to add residual plot to plot.mkinfitJohannes Ranke1-9/+2
2014-04-28Fix uploading of workspace filesJohannes Ranke1-0/+3
2014-04-28Complete the introduction of plot optionsJohannes Ranke1-24/+27
2014-04-26New layout for plotting and fitting, add residual plotJohannes Ranke1-122/+92
2014-03-21Small variation to last commit, in reality fixes #2Johannes Ranke1-1/+1
2014-03-21Update interval variabel list on saving a dataset, fixes #1Johannes Ranke1-0/+1
2014-02-27Format of gmkin workspace files, copyright, updatesJohannes Ranke2-33/+60
- Change the format of the workspace files of gmkin so they can be distributed in the mkin package - Add gmkin workspace datasets FOCUS_2006_gmkin and FOCUS_2006_Z_gmkin - Restrict the unit test with the Schaefer data to parent and primary metabolites as formation fraction and DT50 for A2 are higly correlated and passing the test is platform dependent. For example, the test fails in 1 out of 14 platforms on CRAN as of today - Add Eurofins Regulatory AG copyright notices - Import FME and deSolve instead of depending on them to have cleaner startup
2013-11-18Add GUI start function, keep GUI here in mkinJohannes Ranke3-4/+2

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