Age | Commit message (Collapse) | Author | Files | Lines |
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The vignette illustrates pH dependent degradation (covariate modelling)
with some detail for the parent compound.
Also, a bug in the saem method of the illparms function was fixed, which
prevented to find ill-defined parameters in cases where e.g. slopes of
covariate models have a negative estimate.
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- Update DESCRIPTION
- Update Makefile to document how to use R-patched
- Remove markup from two URLs to avoid CRAN NOTE
- Switch two vignettes from html_document to html_vignette to save space
in the docs directory, also avoiding a CRAN NOTE
- Complete rebuild of pkgdown docs for release
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Also, using mkin analytical solutions for more than one observed
variable is not supported (but could be if out_values would be
reordered).
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In mkinmod, dll_info was not included in the returned model object
in the case that the DLL was moved to a user defined directory.
This is now fixed.
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Update platform dependent test plots
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Thanks to Sebastian Meyer for spotting it.
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Instead of rmarkdown::pdf_document, mkin::hierarchical_kinetics is used
as a document format in the template. In this way, the template file can
be freed from some R code and yaml options that the average user does
not have to be aware of.
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To ensure that tests on different platforms work on the same data, the
mixed modelling test data previosly generated in
tests/testthat/setup_script.R were generated once using the script in
inst/dataset/generation/ds_mixed.R, and are now distributed with the
package.
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For the case of mkin transformations. This gives faster convergence,
and appears to avoid problems with numeric ODE solutions
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Based on parameters in the separate fits that fail the t-test.
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I think it is always preferable to be able to investigate the
saemix object returned.
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For the case of single fits and no ill-defined parameters found
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The bug was introduced by the changes in summary.saem.mmkin.R and
surfaced in the tests when using saemix transformations.
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- Split out llhist and parhist documentation
- Add example code for multistart
- Create a multistart vignette, because the example code fails when run
by pkgdown
- Fix multistart for the case of mkin transformations in the saem fit
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