mkin - Fitting kinetic models to chemical degradation data (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2021-01-25	Change default ylab in plot.mkinfit, explicit ylab for plot.mmkin	Johannes Ranke	1	-0/+3
	See NEWS.md. Closes #12
2020-05-12	Documentation improvements, rebuild static docs	Johannes Ranke	1	-1/+1

2020-04-15	Include random effects in starting parameters	Johannes Ranke	1	-1/+2
	- mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO
2020-04-03	Compiled models article, reduce distractions	Johannes Ranke	1	-0/+5
	- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
2020-03-30	Don't check for gcc on the path in mkinmod	Johannes Ranke	1	-4/+13
	Roxygen update -> formatting changes in Rd files
2019-12-16	Argument ymax for plot.mmkin	Johannes Ranke	1	-1/+3

2019-10-25	Use roxygen for functions and methods	Johannes Ranke	1	-48/+48

2019-09-02	Some changes to improve plots on beamer slides	Johannes Ranke	1	-2/+5

2019-05-08	Add functionality to plot the error model	Johannes Ranke	1	-3/+14
	by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-04-10	Adapt tests, vignettes and examples	Johannes Ranke	1	-3/+3
	- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2016-12-07	Use latex in plots when using tikzDevice	Johannes Ranke	1	-0/+3

2016-11-18	Improve examples for showing with pkgdown	Johannes Ranke	1	-3/+4
	- Use quiet= TRUE in dontrun sections - Use mkinsub in model definitions - Avoid \code{\link{}} in titles
2016-11-17	Remove trailing whitespace, clean headers	Johannes Ranke	1	-4/+4
	Also ignore test.R in the top level directory, as it is not meant to be public
2016-06-27	Show chi2 in plot.mkinfit, round with signif	Johannes Ranke	1	-2/+2

2016-06-25	Fix the plot margins for combined plots	Johannes Ranke	1	-2/+2

2016-06-25	Working state, but not backwards compatible	Johannes Ranke	1	-1/+1
	In this commit, the separatation of plots for observed variables works. The formatting should be improved. However, in gmkin, plotting with show_residuals = TRUE is used, and the GUI expects that the residual plot is below the main plot. This behaviour should be restored.
2016-06-24	Convert main vignette to Rmd/html, add_err(), fixes	Johannes Ranke	1	-0/+5

2015-07-22	Remove periods in help file titles	Johannes Ranke	1	-1/+1

2015-07-20	Updates and fixes to documentation	Johannes Ranke	1	-1/+1

2015-06-29	Quiet fitting in examples and more links for static docs.	Johannes Ranke	1	-1/+1

2015-06-26	Pass R CMD check --as-cran, vignette rebuild	Johannes Ranke	1	-2/+4

2015-06-26	More plotting in help files, fix Make- and .*ignore files	Johannes Ranke	1	-1/+2

2015-06-26	Subsetting and plotting for mmkin objects	Johannes Ranke	1	-0/+50
	Including documentation and documentation improvements for mmkin().