mkin - Fitting kinetic models to chemical degradation data (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2021-06-09	Rudimentary support for setting up nlmixr models	Johannes Ranke	1	-11/+13
	- All degradation models are specified as ODE models. This appears to be fast enough - Error models are being translated to nlmixr as close to the mkin error model as possible. When using the 'saem' backend, it appears not to be possible to use the same error model for more than one observed variable - No support yet for models with parallel formation of metabolites, where the ilr transformation is used in mkin per default - There is a bug in nlmixr which appears to be triggered if the data are not balanced, see nlmixrdevelopment/nlmixr#530 - There is a print and a plot method, the summary method is not finished
2021-02-06	Reintroduce interface to saemix	Johannes Ranke	1	-0/+100
	Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-02-03	Prepare for v1.0.0v1.0.0	Johannes Ranke	1	-100/+0
	- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2021-01-11	Rebuild docs	Johannes Ranke	1	-1/+1

2021-01-06	Make saemix and corresponding tests optional	Johannes Ranke	1	-1/+1
	Address release critical check and test issues
2020-11-11	Skip vdiffr tests on travis as they are not robust	Johannes Ranke	1	-1/+2
	As can be seen in the miniscule change seen on R-devel in the reference plot updated with this commit
2020-11-09	Doc improvements	Johannes Ranke	1	-0/+1

2020-11-09	Some work on example code, pkgdown update	Johannes Ranke	1	-15/+24

2020-11-08	Improve saem method, add summary	Johannes Ranke	1	-0/+89
	Also make the endpoints function work for saem objects.