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2021-06-09Rudimentary support for setting up nlmixr modelsJohannes Ranke1-11/+13
- All degradation models are specified as ODE models. This appears to be fast enough - Error models are being translated to nlmixr as close to the mkin error model as possible. When using the 'saem' backend, it appears not to be possible to use the same error model for more than one observed variable - No support yet for models with parallel formation of metabolites, where the ilr transformation is used in mkin per default - There is a bug in nlmixr which appears to be triggered if the data are not balanced, see nlmixrdevelopment/nlmixr#530 - There is a print and a plot method, the summary method is not finished
2021-02-06Reintroduce interface to saemixJohannes Ranke1-0/+100
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-100/+0
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2021-01-11Rebuild docsJohannes Ranke1-1/+1
2021-01-06Make saemix and corresponding tests optionalJohannes Ranke1-1/+1
Address release critical check and test issues
2020-11-11Skip vdiffr tests on travis as they are not robustJohannes Ranke1-1/+2
As can be seen in the miniscule change seen on R-devel in the reference plot updated with this commit
2020-11-09Doc improvementsJohannes Ranke1-0/+1
2020-11-09Some work on example code, pkgdown updateJohannes Ranke1-15/+24
2020-11-08Improve saem method, add summaryJohannes Ranke1-0/+89
Also make the endpoints function work for saem objects.

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