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2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke6-6/+45
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-26Add another NAFTA dataset + testJohannes Ranke2-8/+9
2019-02-25Test printing the summary of an mkinfit objectJohannes Ranke1-2/+2
2019-02-22Implement the NAFTA evaluation schemeJohannes Ranke4-0/+136
2019-02-22Further adaptations for the logistic modelJohannes Ranke1-3/+4
- Make mmkin compatible - Return DT50 values corresponding to k0 and kmax - Turn incompatible parameter names in parms.ini from an error to a warning, in order to make it possible to use this argument in calls to mmkin
2019-02-21Remove unused codeJohannes Ranke1-1/+0
2019-02-21Make example logistic fit quietJohannes Ranke1-1/+1
2019-02-21Add the logistic modelJohannes Ranke1-0/+68
2019-01-31Correct title for CAKE_exportJohannes Ranke1-1/+1
Add NEWS entry. Static documentation rebuilt by pkgdown
2019-01-31Export to CAKE study fileJohannes Ranke1-0/+73
2018-11-26Add AIC method for mmkin column objectsJohannes Ranke2-4/+52
Static documentation rebuilt by pkgdown
2018-11-26Further improvement of the logLik.mkinfit helpJohannes Ranke1-1/+3
Static documentation rebuilt by pkgdown
2018-11-26Static documentation rebuilt by pkgdownJohannes Ranke1-1/+19
2018-11-26Support logLik and AIC for manual weightsJohannes Ranke1-2/+4
Static documentation rebuilt by pkgdown
2018-11-23Add logLik method to enable AIC() on mkinfit modelsJohannes Ranke2-1/+44
Further relax two tests to pass build on Travis
2018-09-18Make mkinpredict generic and write a method for fitsJohannes Ranke1-16/+26
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke1-1/+1
2018-09-14Exclude more example code from CRAN checksJohannes Ranke3-9/+12
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
2018-09-13Enable new error model in gmkinJohannes Ranke1-2/+3
Also improve the irls fitting of the error model and add a test for FOCUS_2006_C where the second component of the error model is zero
2018-09-06Small doc corrections and improvementsJohannes Ranke1-7/+8
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke3-9/+23
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-03-21Give a bit more advice on multicore use on WindowsJohannes Ranke1-1/+3
2018-03-11Adapt usage section in help for old dataset to lazy loadingJohannes Ranke5-5/+5
Rebuild pkgdown reference
2018-02-06Skip some tests on CRAN, more quiet examplesv0.9.47.1Johannes Ranke1-3/+3
2018-01-30Improve documentation of Rocke and Lorenzato modelJohannes Ranke1-2/+3
Static documentation except articles rebuilt by pkgdown
2018-01-30Reweighting with two-component error modelJohannes Ranke2-6/+47
Static documentation except articles rebuilt by pkgdown
2018-01-07Don't run water sediment example to reduce time neededJohannes Ranke1-0/+2
Static documentation except articles rebuilt by pkgdown
2018-01-05Convert synthetic_data_for_UBA_2014 to mkindsJohannes Ranke2-5/+4
Static documentation except articles rebuilt by pkgdown
2018-01-05Experimental test data from UBA 2014 expertiseJohannes Ranke2-1/+53
- Typo in synthetic data for UBA - Static documentation except articles rebuilt by pkgdown
2017-11-16Add the code used for generating synthetic_data_for_UBAJohannes Ranke2-4/+83
Static documentation except articles rebuilt by pkgdown
2017-07-21Fix URLsJohannes Ranke13-13/+13
2017-07-21Rename twa to max_twa_parent, update docsJohannes Ranke1-4/+4
2017-05-05Static docs except articles rebuilt with current pkgdownJohannes Ranke14-14/+14
2016-12-21TWA calculation for SFO, FOMC and DFOP (parent)Johannes Ranke1-0/+40
2016-12-07Use latex in plots when using tikzDeviceJohannes Ranke2-0/+7
2016-11-18Improve examples for showing with pkgdownJohannes Ranke13-43/+72
- Use quiet= TRUE in dontrun sections - Use mkinsub in model definitions - Avoid \code{\link{}} in titles
2016-11-18Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)Johannes Ranke2-3/+3
Using branch 'jranke' on jranke/pkgdown, fixing issues hadley/pgkdown#178 and hadley/pkgdown#213 Remove plot=TRUE from mkinfit calls also in dontrun sections of examples to avoid a flood png files documenting the progress of the fit.
2016-11-17Remove trailing whitespace, clean headersJohannes Ranke13-85/+85
Also ignore test.R in the top level directory, as it is not meant to be public
2016-06-28Convenience wrapper plot_sep, further vignette updatesJohannes Ranke1-0/+5
2016-06-27Improve listing of weights in output, update NEWSJohannes Ranke2-9/+9
2016-06-27Show chi2 in plot.mkinfit, round with signifJohannes Ranke3-7/+18
2016-06-25Fix the plot margins for combined plotsJohannes Ranke3-9/+12
2016-06-25Now the old behaviour is restored for compatibility reasonsJohannes Ranke1-3/+8
When observed variables are not shown in separate plots, the residual plot is shown in the lower third of the total plotting area
2016-06-25Working state, but not backwards compatibleJohannes Ranke3-20/+39
In this commit, the separatation of plots for observed variables works. The formatting should be improved. However, in gmkin, plotting with show_residuals = TRUE is used, and the GUI expects that the residual plot is below the main plot. This behaviour should be restored.
2016-06-24Convert main vignette to Rmd/html, add_err(), fixesJohannes Ranke2-0/+103
2016-06-24TypoJohannes Ranke1-1/+1
2016-03-23Added 'from_max_mean' to 'mkinfit'.Johannes Ranke1-0/+8
- Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel
2015-11-09Exclude more mkinmod examples, as winbuilder NOTEs > 5 sJohannes Ranke1-1/+1
2015-11-09Rebuild vignettes and static documentationJohannes Ranke1-2/+1
2015-10-19Add the R6 class mkindsJohannes Ranke2-0/+53

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