Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2018-03-21 | Give a bit more advice on multicore use on Windows | Johannes Ranke | 1 | -1/+3 | |
2018-03-11 | Adapt usage section in help for old dataset to lazy loading | Johannes Ranke | 5 | -5/+5 | |
Rebuild pkgdown reference | |||||
2018-02-06 | Skip some tests on CRAN, more quiet examplesv0.9.47.1 | Johannes Ranke | 1 | -3/+3 | |
2018-01-30 | Improve documentation of Rocke and Lorenzato model | Johannes Ranke | 1 | -2/+3 | |
Static documentation except articles rebuilt by pkgdown | |||||
2018-01-30 | Reweighting with two-component error model | Johannes Ranke | 2 | -6/+47 | |
Static documentation except articles rebuilt by pkgdown | |||||
2018-01-07 | Don't run water sediment example to reduce time needed | Johannes Ranke | 1 | -0/+2 | |
Static documentation except articles rebuilt by pkgdown | |||||
2018-01-05 | Convert synthetic_data_for_UBA_2014 to mkinds | Johannes Ranke | 2 | -5/+4 | |
Static documentation except articles rebuilt by pkgdown | |||||
2018-01-05 | Experimental test data from UBA 2014 expertise | Johannes Ranke | 2 | -1/+53 | |
- Typo in synthetic data for UBA - Static documentation except articles rebuilt by pkgdown | |||||
2017-11-16 | Add the code used for generating synthetic_data_for_UBA | Johannes Ranke | 2 | -4/+83 | |
Static documentation except articles rebuilt by pkgdown | |||||
2017-07-21 | Fix URLs | Johannes Ranke | 13 | -13/+13 | |
2017-07-21 | Rename twa to max_twa_parent, update docs | Johannes Ranke | 1 | -4/+4 | |
2017-05-05 | Static docs except articles rebuilt with current pkgdown | Johannes Ranke | 14 | -14/+14 | |
2016-12-21 | TWA calculation for SFO, FOMC and DFOP (parent) | Johannes Ranke | 1 | -0/+40 | |
2016-12-07 | Use latex in plots when using tikzDevice | Johannes Ranke | 2 | -0/+7 | |
2016-11-18 | Improve examples for showing with pkgdown | Johannes Ranke | 13 | -43/+72 | |
- Use quiet= TRUE in dontrun sections - Use mkinsub in model definitions - Avoid \code{\link{}} in titles | |||||
2016-11-18 | Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE) | Johannes Ranke | 2 | -3/+3 | |
Using branch 'jranke' on jranke/pkgdown, fixing issues hadley/pgkdown#178 and hadley/pkgdown#213 Remove plot=TRUE from mkinfit calls also in dontrun sections of examples to avoid a flood png files documenting the progress of the fit. | |||||
2016-11-17 | Remove trailing whitespace, clean headers | Johannes Ranke | 13 | -85/+85 | |
Also ignore test.R in the top level directory, as it is not meant to be public | |||||
2016-06-28 | Convenience wrapper plot_sep, further vignette updates | Johannes Ranke | 1 | -0/+5 | |
2016-06-27 | Improve listing of weights in output, update NEWS | Johannes Ranke | 2 | -9/+9 | |
2016-06-27 | Show chi2 in plot.mkinfit, round with signif | Johannes Ranke | 3 | -7/+18 | |
2016-06-25 | Fix the plot margins for combined plots | Johannes Ranke | 3 | -9/+12 | |
2016-06-25 | Now the old behaviour is restored for compatibility reasons | Johannes Ranke | 1 | -3/+8 | |
When observed variables are not shown in separate plots, the residual plot is shown in the lower third of the total plotting area | |||||
2016-06-25 | Working state, but not backwards compatible | Johannes Ranke | 3 | -20/+39 | |
In this commit, the separatation of plots for observed variables works. The formatting should be improved. However, in gmkin, plotting with show_residuals = TRUE is used, and the GUI expects that the residual plot is below the main plot. This behaviour should be restored. | |||||
2016-06-24 | Convert main vignette to Rmd/html, add_err(), fixes | Johannes Ranke | 2 | -0/+103 | |
2016-06-24 | Typo | Johannes Ranke | 1 | -1/+1 | |
2016-03-23 | Added 'from_max_mean' to 'mkinfit'. | Johannes Ranke | 1 | -0/+8 | |
- Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel | |||||
2015-11-09 | Exclude more mkinmod examples, as winbuilder NOTEs > 5 s | Johannes Ranke | 1 | -1/+1 | |
2015-11-09 | Rebuild vignettes and static documentation | Johannes Ranke | 1 | -2/+1 | |
2015-10-19 | Add the R6 class mkinds | Johannes Ranke | 2 | -0/+53 | |
2015-10-19 | Add a print method for mkinmod objects | Johannes Ranke | 1 | -0/+19 | |
2015-10-16 | Full compound names in models that are shown in the plot | Johannes Ranke | 2 | -2/+14 | |
2015-07-22 | Remove periods in help file titles | Johannes Ranke | 7 | -7/+7 | |
2015-07-20 | Use UTF-8 in the Schaefer 07 help file | Johannes Ranke | 1 | -2/+2 | |
2015-07-20 | Updates and fixes to documentation | Johannes Ranke | 4 | -4/+3 | |
2015-07-20 | Remove Rdversion tag that disappeared from "Writing R extensions" | Johannes Ranke | 13 | -13/+0 | |
2015-06-29 | Quiet fitting in examples and more links for static docs. | Johannes Ranke | 9 | -11/+22 | |
2015-06-26 | Pass R CMD check --as-cran, vignette rebuild | Johannes Ranke | 2 | -3/+6 | |
2015-06-26 | More plotting in help files, fix Make- and .*ignore files | Johannes Ranke | 6 | -20/+12 | |
2015-06-26 | Subsetting and plotting for mmkin objects | Johannes Ranke | 3 | -3/+89 | |
Including documentation and documentation improvements for mmkin(). | |||||
2015-06-25 | Fix fitting with parLapply, doc fix | Johannes Ranke | 1 | -0/+1 | |
2015-06-25 | Add mmkin for testing | Johannes Ranke | 1 | -0/+64 | |
2015-06-23 | Fix the changed documentation | Johannes Ranke | 1 | -3/+4 | |
2015-06-23 | Small documenation changes | Johannes Ranke | 3 | -10/+12 | |
2015-06-23 | Hopefully fix compiling on Solaris, verbose option | Johannes Ranke | 1 | -2/+11 | |
- Only declare the time variable in the C code when needed in the derivatives. - Add the option to show verbose output of cfunction() when compiling the model to a shared library. | |||||
2015-06-23 | Improve formatting of \dontrun section | Johannes Ranke | 1 | -2/+4 | |
2015-06-20 | Reorganize transform_odeparms example, reduce check time | Johannes Ranke | 1 | -1/+5 | |
2015-06-20 | Low-level generation of compiled models | Johannes Ranke | 2 | -3/+3 | |
As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. | |||||
2015-06-05 | Make the examples that are run more quiet | Johannes Ranke | 1 | -2/+2 | |
2015-05-19 | Include output in README, use mkinsub() in example code | Johannes Ranke | 2 | -15/+33 | |
2015-05-18 | Make checking faster, testing is done by tests | Johannes Ranke | 3 | -13/+10 | |