Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2022-03-19 | Improvements to CAKE_export() | Johannes Ranke | 1 | -31/+15 | |
2022-03-14 | Reduce check time for CRAN, releasev1.1.0 | Johannes Ranke | 1 | -16/+32 | |
2022-03-08 | Avoid using multiple processes on CRAN check machines | Johannes Ranke | 1 | -5/+5 | |
2022-03-07 | Remove nlmixr interface for release of mkin 1.1.0 | Johannes Ranke | 1 | -24/+21 | |
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined). | |||||
2022-03-03 | R-devel with openblas | Johannes Ranke | 1 | -13/+13 | |
2022-03-03 | More work to try to pass tests on R-devel winbuilder | Johannes Ranke | 1 | -10/+10 | |
2022-03-02 | Make tests more platform independent, update docs | Johannes Ranke | 1 | -17/+17 | |
2022-03-02 | Fix nlmixr fits with parallel metabolites | Johannes Ranke | 1 | -13/+13 | |
2022-03-02 | Add a test for tffm0() | Johannes Ranke | 1 | -7/+8 | |
2022-03-01 | Avoid using cat() for default output, tests | Johannes Ranke | 1 | -13/+13 | |
2022-03-01 | Add some more tests | Johannes Ranke | 1 | -11/+17 | |
2022-02-28 | Improve tests, skip some on Travis | Johannes Ranke | 1 | -10/+10 | |
Respect digits argument when printing correlations in summaries | |||||
2022-02-28 | Add nlmixr tests, reorganize, test intervals() | Johannes Ranke | 1 | -19/+22 | |
2022-02-10 | GNUMakefile: Convince testthat to give dynamic output | Johannes Ranke | 1 | -156/+7 | |
This means that we still get the \r in the test logs so so the postprocessing with sed works unmodified | |||||
2022-02-09 | Adapt saemix interface to saemix 3.0 on CRAN | Johannes Ranke | 1 | -8/+157 | |
2021-11-17 | Update required saemix version, update tests | Johannes Ranke | 1 | -30/+30 | |
2021-09-16 | Adapt and improve the dimethenamid vignette | Johannes Ranke | 1 | -3/+3 | |
Adapt to the corrected data and unify control parameters for saemix and nlmixr with saem. Update docs | |||||
2021-09-16 | Merge branch 'master' into nlmixr | Johannes Ranke | 1 | -27/+13 | |
2021-09-15 | Fix Open EFSA URL, changelog for 1.0.5v1.0.5 | Johannes Ranke | 1 | -4/+4 | |
The EFSA URL failed on winbuilder because some cookie sets a different domain, so I am now using \href{} with the full link as link text instead of \url{} | |||||
2021-09-15 | Update test result to corrected data, version bump | Johannes Ranke | 1 | -8/+8 | |
2021-07-23 | Merge branch 'master' into nlmixr | Johannes Ranke | 1 | -20/+22 | |
After the merge, run make test and accept the new snapshot for the mixed model fit for an nlme object | |||||
2021-07-23 | Rerun tests, use current vdiffr on travis | Johannes Ranke | 1 | -33/+9 | |
2021-06-17 | Let backtransform_odeparms handle nlmixr formation fractions | Johannes Ranke | 1 | -21/+24 | |
Also adapt summary.nlmixr.mmkin to correctly handle the way formation fractions are translated to nlmixr | |||||
2021-04-21 | Merge branch 'master' into saemix | Johannes Ranke | 1 | -20/+29 | |
2021-04-21 | Version 1.0.4 published yesterdayv1.0.4 | Johannes Ranke | 1 | -18/+25 | |
2021-03-31 | Bug fix in plot.mkinfit | Johannes Ranke | 1 | -8/+25 | |
In residual plots, use xlab and xlim if appropriate | |||||
2021-03-09 | Some improvements for borderline cases | Johannes Ranke | 1 | -18/+18 | |
- fit_with_errors for saem() - test_log_parms for mean_degparms() and saem() | |||||
2021-02-15 | Fully rebuild docs, rerun tests and check | Johannes Ranke | 1 | -14/+14 | |
2021-02-15 | Merge branch 'master' into saemix | Johannes Ranke | 1 | -1/+1 | |
2021-02-15 | Improve README, introductory vignette and some other docsv1.0.3 | Johannes Ranke | 1 | -2/+2 | |
Also bump version to 1.0.3. | |||||
2021-02-13 | Merge branch 'master' into saemix | Johannes Ranke | 1 | -10/+10 | |
Run make testcheck to regenerate logs with merge conflicts | |||||
2021-02-13 | Update for gmkin 0.6.12v1.0.2 | Johannes Ranke | 1 | -8/+8 | |
mkinfit: Keep model names stored in mkinmod objects, avoiding their loss in gmkin | |||||
2021-02-06 | Reintroduce interface to saemix | Johannes Ranke | 1 | -10/+17 | |
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed. | |||||
2021-02-06 | Increase test tolerance for parameter comparisonsv1.0.1 | Johannes Ranke | 1 | -10/+10 | |
Platform dependence also revealed after upgrade to bullseye | |||||
2021-02-04 | Documentation improvements, mainly fixing example code | Johannes Ranke | 1 | -2/+2 | |
The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0. | |||||
2021-02-03 | Prepare for v1.0.0v1.0.0 | Johannes Ranke | 1 | -33/+20 | |
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest | |||||
2021-01-06 | Make saemix and corresponding tests optional | Johannes Ranke | 1 | -23/+29 | |
Address release critical check and test issues | |||||
2020-12-19 | Dimethenamid data, normalisation options | Johannes Ranke | 1 | -8/+8 | |
2020-12-10 | Add a test for saemix with deSolve | Johannes Ranke | 1 | -9/+16 | |
But skip the test as it takes too long to always run | |||||
2020-12-09 | Make saem using mkinpredict work again | Johannes Ranke | 1 | -7/+7 | |
I threw out mclapply as it did not play well with the linear algebra routines used in the saemix code. Most of the change is actually indentation in the code creating the model function. But there is an important fix in mkinpredict which I had broken. | |||||
2020-12-09 | Some test fixes | Johannes Ranke | 1 | -38/+7 | |
2020-12-09 | Add more tests and fix HS in saem | Johannes Ranke | 1 | -9/+40 | |
2020-12-09 | Fix a test I accidentally broke | Johannes Ranke | 1 | -17/+12 | |
2020-12-09 | Any yet more tests | Johannes Ranke | 1 | -14/+19 | |
2020-12-09 | Fix tests and rerun | Johannes Ranke | 1 | -28/+10 | |
2020-12-08 | mixed.mmkin and test coverage | Johannes Ranke | 1 | -17/+23 | |
2020-12-02 | Possibility to specify random effects structures | Johannes Ranke | 1 | -13/+9 | |
The default is pdDiag again, as we often have a small number of datasets in degradation kinetics. | |||||
2020-11-30 | Log-Cholesky parameterisation as default in nlme.mmkin | Johannes Ranke | 1 | -9/+13 | |
2020-11-27 | Improved way to have persistent DLLs for mkinmod | Johannes Ranke | 1 | -6/+6 | |
Depends on inline >= 0.16.2 (including the bug fixes from eddelbuettel/inline#18), which provides 'moveDLL' to store the DLL for a compiled function in a safe place in case the argument 'dll_dir' is specified in the call to 'mkinmod'. Huge thanks to Dirk @eddelbuettel for his review and support for the work on the inline package. | |||||
2020-11-24 | Support storing mkinmod compiled code as CFunc objects | Johannes Ranke | 1 | -8/+8 | |
With automatic reloading in mkinfit and mkinpredict in case the DLL is not loaded and the original DLL path has been cleaned up. Depends on jranke/inline@974bdea04fcedfafaab231e6f359c88270b56cb9 See inline#13 |