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The vignette illustrates pH dependent degradation (covariate modelling)
with some detail for the parent compound.
Also, a bug in the saem method of the illparms function was fixed, which
prevented to find ill-defined parameters in cases where e.g. slopes of
covariate models have a negative estimate.
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Update platform dependent test plots
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Thanks to Sebastian Meyer for spotting it.
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llquant argument, improved legend text, tests
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Save winbuilder/CRAN check time...
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To ensure that tests on different platforms work on the same data, the
mixed modelling test data previosly generated in
tests/testthat/setup_script.R were generated once using the script in
inst/dataset/generation/ds_mixed.R, and are now distributed with the
package.
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Due to an oversight, error.init was not really passed to saemix_model in
saem.mmkin. The new initial values were reverted to c(1, 1), in order to
avoid changing the test results. Initial values for error model
parameters are now shown in parplot.multistart.
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For the case of mkin transformations. This gives faster convergence,
and appears to avoid problems with numeric ODE solutions
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That parhist name was not the brightest idea, as it does
not show histograms.
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Also skip long-running test with saem using the analytical from mkin
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