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2023-08-17Update tests without any openblas variantJohannes Ranke3-648/+647
This even a bit faster.
2023-08-17Update platform specific tests on desktopJohannes Ranke3-647/+648
2023-08-04Mesotrione data and vignetteJohannes Ranke3-648/+647
The vignette illustrates pH dependent degradation (covariate modelling) with some detail for the parent compound. Also, a bug in the saem method of the illparms function was fixed, which prevented to find ill-defined parameters in cases where e.g. slopes of covariate models have a negative estimate.
2023-04-01Update tests on 5950xJohannes Ranke3-120/+120
Update platform dependent test plots
2023-03-22Fix typo in mkinerrminJohannes Ranke3-120/+120
Thanks to Sebastian Meyer for spotting it.
2022-12-06Some parplot improvementsJohannes Ranke2-89/+84
llquant argument, improved legend text, tests
2022-11-18Move two saem fits from setup script to skipped testsJohannes Ranke1-0/+2502
Save winbuilder/CRAN check time...
2022-11-18Make mixed model test data permanent to ensure reproducibilityJohannes Ranke4-58/+62
To ensure that tests on different platforms work on the same data, the mixed modelling test data previosly generated in tests/testthat/setup_script.R were generated once using the script in inst/dataset/generation/ds_mixed.R, and are now distributed with the package.
2022-11-18Pass error.init to saemix_model, show in parplotJohannes Ranke2-0/+4
Due to an oversight, error.init was not really passed to saemix_model in saem.mmkin. The new initial values were reverted to c(1, 1), in order to avoid changing the test results. Initial values for error model parameters are now shown in parplot.multistart.
2022-11-14Automatic starting parameters for saem.mmkinJohannes Ranke2-137/+146
For the case of mkin transformations. This gives faster convergence, and appears to avoid problems with numeric ODE solutions
2022-10-28Rename parhist to parplot and make it genericJohannes Ranke4-1/+2
That parhist name was not the brightest idea, as it does not show histograms.
2022-10-26Reduced sfo model for multistart.saem.mkin testsJohannes Ranke2-28/+126
2022-10-26Remove kernel density estimate from llhistJohannes Ranke2-17/+81
2022-10-26Try to make multistart (more) reproducibleJohannes Ranke2-143/+138
2022-10-26Make multistart work with testthat scopesJohannes Ranke2-0/+257
Also skip long-running test with saem using the analytical from mkin

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