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2023-04-01Update tests on 5950xJohannes Ranke4-121/+121
Update platform dependent test plots
2023-03-22Fix typo in mkinerrminJohannes Ranke4-121/+121
Thanks to Sebastian Meyer for spotting it.
2022-12-06Some parplot improvementsJohannes Ranke2-89/+84
llquant argument, improved legend text, tests
2022-11-18Move two saem fits from setup script to skipped testsJohannes Ranke1-0/+0
Save winbuilder/CRAN check time...
2022-11-18Make mixed model test data permanent to ensure reproducibilityJohannes Ranke4-58/+62
To ensure that tests on different platforms work on the same data, the mixed modelling test data previosly generated in tests/testthat/setup_script.R were generated once using the script in inst/dataset/generation/ds_mixed.R, and are now distributed with the package.
2022-11-18Pass error.init to saemix_model, show in parplotJohannes Ranke2-0/+4
Due to an oversight, error.init was not really passed to saemix_model in saem.mmkin. The new initial values were reverted to c(1, 1), in order to avoid changing the test results. Initial values for error model parameters are now shown in parplot.multistart.
2022-11-14Automatic starting parameters for saem.mmkinJohannes Ranke3-1303/+1312
For the case of mkin transformations. This gives faster convergence, and appears to avoid problems with numeric ODE solutions
2022-10-28Rename parhist to parplot and make it genericJohannes Ranke4-1/+2
That parhist name was not the brightest idea, as it does not show histograms.
2022-10-26Reduced sfo model for multistart.saem.mkin testsJohannes Ranke2-28/+126
2022-10-26Remove kernel density estimate from llhistJohannes Ranke2-17/+81
2022-10-26Try to make multistart (more) reproducibleJohannes Ranke2-143/+138
2022-10-26Make multistart work with testthat scopesJohannes Ranke2-0/+257
Also skip long-running test with saem using the analytical from mkin
2022-10-25Change DFOP mixed model data in tests, updatesJohannes Ranke1-1202/+1202
2022-07-21Summary method for mmkin objectsJohannes Ranke4-5038/+1169
Also, add a method for gathering convergence information and a method for gathering information on ill-defined parameters
2022-07-12Tests before releasev1.1.1Johannes Ranke2-0/+3869
2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke2-1169/+1169
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-04-13More control of y axes in plot.mkinfit, updatesJohannes Ranke4-7/+7
Documentation and test results were updated, the latter with regard to the previous work on plot.mixed.mmkin.
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-2193/+2199
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-1155/+1163
2022-02-09Adapt saemix interface to saemix 3.0 on CRANJohannes Ranke2-1445/+1445
2021-11-17Update required saemix version, update testsJohannes Ranke2-1439/+1439
2021-07-23Merge branch 'master' into nlmixrJohannes Ranke18-0/+8459
After the merge, run make test and accept the new snapshot for the mixed model fit for an nlme object
2021-07-23Update vdiffr tests for version 1.0Johannes Ranke16-0/+5246

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