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2020-05-07Another overhaul of analytical solutionsJohannes Ranke1-0/+5
Still in preparation for analytical solutions of coupled models
2020-04-18Avoid assignment to .GlobalEnv for CRANJohannes Ranke1-5/+0
2020-04-17Add AIC, BIC and log likelihood to summary.mkinfitJohannes Ranke1-0/+5
2019-10-21Fix platform dependence of the correlation matrixJohannes Ranke1-6/+1
Especially on winbuilder (i386 and amd64)
2019-10-21Refactor mkinfit, infrastructure workJohannes Ranke1-7/+5
mkinfit objects now include an ll() function to calculate the log-likelihood. Part of the code was refactored, hopefully making it easier to read and maintain. IRLS is currently the default algorithm for the error model "obs", for no particular reason. This may be subject to change when I get around to investigate. Slow tests are now in a separate subdirectory and will probably only be run by my own Makefile target. Formatting of test logs is improved. Roundtripping error model parameters works with a precision of 10% when we use lots of replicates in the synthetic data (see slow tests). This is not new in this commit, but as I think it is reasonable this closes #7.
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-06-05Adapt tests to new algorithms and outputJohannes Ranke1-2/+3
One of the tests exceeded the number of iterations when using the d_3 error model algorithm, so only use "direct" in this case.
2019-05-02Improve testsJohannes Ranke1-6/+6
- Improve control of the number of cores - Reduce the precision of the correlation matrix in the test summary output, as the exact results are platform dependent
2019-05-02Better initials for error model parametersJohannes Ranke1-5/+5
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-24Improve output and update testsJohannes Ranke1-3/+3
Remove skipped tests as I do not intend to reactivate them
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-22/+26
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-02-25Fix tests and add plot and print for naftaJohannes Ranke1-1/+1
2019-02-25Test printing the summary of an mkinfit objectJohannes Ranke1-0/+79

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