aboutsummaryrefslogtreecommitdiff
path: root/tests/testthat/test_mixed.R
AgeCommit message (Collapse)AuthorFilesLines
2023-04-16Skip another test on CRAN to save CPU cyclesJohannes Ranke1-0/+2
2023-04-16Skip the Eigenvalue based saem testJohannes Ranke1-5/+6
It took too long, and this solution method is not recommended. We are saving 140 seconds here on my system, so more time is saved on travis.
2023-04-15Increase test coverageJohannes Ranke1-0/+51
Also, using mkin analytical solutions for more than one observed variable is not supported (but could be if out_values would be reordered).
2022-11-19Confirm which test fail on R-develv1.2.1Johannes Ranke1-1/+2
2022-11-18Move two saem fits from setup script to skipped testsJohannes Ranke1-5/+3
Save winbuilder/CRAN check time...
2022-11-18Make mixed model test data permanent to ensure reproducibilityJohannes Ranke1-16/+16
To ensure that tests on different platforms work on the same data, the mixed modelling test data previosly generated in tests/testthat/setup_script.R were generated once using the script in inst/dataset/generation/ds_mixed.R, and are now distributed with the package.
2022-11-18Round parameters with signif() before printingJohannes Ranke1-1/+6
This will hopefully make the test pass on all relevant platforms.
2022-10-29Another attempt to make the test robustJohannes Ranke1-1/+1
As the last update failed on travis. Now we should be more robust, as rounding to one digit works better when parameters are log-transformed (mkin transformations) in the output.
2022-10-29Make test independent of saemix error model parameter patchJohannes Ranke1-1/+1
As mentioned in d44c17da6d62568b
2022-10-26Make multistart work with testthat scopesJohannes Ranke1-1/+0
Also skip long-running test with saem using the analytical from mkin
2022-10-25Round also for nlme print method...Johannes Ranke1-5/+6
2022-10-25Increase rounding in test for travisJohannes Ranke1-1/+1
As the "const" error model parameters is stored on log scale in nlme
2022-10-25Explanatory commentJohannes Ranke1-0/+1
2022-10-25Avoid another platform dependenceJohannes Ranke1-0/+5
Caused by the fact that printing error model parameters in nlme summaries do not honor the digits argument.
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-16/+1
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-03More work to try to pass tests on R-devel winbuilderJohannes Ranke1-1/+1
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-13/+13
2022-03-01Some more tests for nlmixr.mmkinJohannes Ranke1-0/+2
2022-02-28Add test for summary.nlmixr.mmkinJohannes Ranke1-0/+14
2022-02-28Relax a test for travisJohannes Ranke1-1/+1
2022-02-28Add nlmixr tests, reorganize, test intervals()Johannes Ranke1-92/+1
2022-02-28With saemix 3.0 on CRAN there's no need to check for it in testsJohannes Ranke1-3/+0
2022-02-09Adapt saemix interface to saemix 3.0 on CRANJohannes Ranke1-2/+2
2021-06-12Small cosmeticsJohannes Ranke1-1/+1
2021-03-09Some improvements for borderline casesJohannes Ranke1-7/+17
- fit_with_errors for saem() - test_log_parms for mean_degparms() and saem()
2021-02-06Reintroduce interface to saemixJohannes Ranke1-1/+134
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-02-06Address issue revealed by additional tests on CRANJohannes Ranke1-1/+1
Remove tests relying on non-convergence of the FOMC fit to the FOCUS A dataset, as this is platform dependent. After the upgrade, the fit converges on this system as well, although neither ATLAS is used, nor R was configured disabling long doubles (these were the conditions under which the tests failed on CRAN).
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-131/+0
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2021-01-06Make saemix and corresponding tests optionalJohannes Ranke1-4/+9
Address release critical check and test issues
2020-12-19Dimethenamid data, normalisation optionsJohannes Ranke1-1/+1
2020-12-10Tried to find a fast test for deSolve in saemixJohannes Ranke1-0/+6
But could not find one.
2020-12-10Add a test for saemix with deSolveJohannes Ranke1-5/+12
But skip the test as it takes too long to always run
2020-12-09Some test fixesJohannes Ranke1-1/+1
2020-12-09Add more tests and fix HS in saemJohannes Ranke1-8/+47
2020-12-09Any yet more testsJohannes Ranke1-1/+3
2020-12-09Update test output and reduce precision for travisJohannes Ranke1-2/+2
2020-12-09More testsJohannes Ranke1-33/+95
2020-12-08mixed.mmkin and test coverageJohannes Ranke1-0/+35

Contact - Imprint