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2022-03-19Improvements to CAKE_export()Johannes Ranke3-9/+18
2022-03-14Reduce check time for CRAN, releasev1.1.0Johannes Ranke4-19/+17
2022-03-08Avoid using multiple processes on CRAN check machinesJohannes Ranke1-3/+3
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke8-2421/+2231
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-03Reintroduce the skipped test, with a workaroundJohannes Ranke1-8/+15
2022-03-03Skip a test that assigns to the global environmentJohannes Ranke1-0/+1
2022-03-03More work to try to pass tests on R-devel winbuilderJohannes Ranke5-30/+24
2022-03-02Skip some tests on CRAN to reduce loadJohannes Ranke1-0/+2
In the hope that winbuilder will cope better then
2022-03-02Make tests more platform independent, update docsJohannes Ranke14-1393/+1343
2022-03-02Fix nlmixr fits with parallel metabolitesJohannes Ranke1-3/+14
2022-03-02Add a test for tffm0()Johannes Ranke1-0/+10
2022-03-01Avoid using cat() for default output, testsJohannes Ranke2-4/+13
2022-03-01Add some more testsJohannes Ranke7-35/+137
2022-03-01Some more tests for nlmixr.mmkinJohannes Ranke2-0/+6
2022-03-01Add a test for the DMTA dataJohannes Ranke1-39/+41
comparing nlme and saemix. This test shows a reasonable evaluation of the DMTA data with nlme and saemix, which was missing, as the data used in the paper are flawed.
2022-02-28Add test for summary.nlmixr.mmkinJohannes Ranke3-0/+118
2022-02-28Relax a test for travisJohannes Ranke2-27/+27
2022-02-28Improve tests, skip some on TravisJohannes Ranke3-13/+60
Respect digits argument when printing correlations in summaries
2022-02-28Add nlmixr tests, reorganize, test intervals()Johannes Ranke5-157/+214
2022-02-28With saemix 3.0 on CRAN there's no need to check for it in testsJohannes Ranke5-126/+79
2022-02-09Adapt saemix interface to saemix 3.0 on CRANJohannes Ranke6-1481/+1471
2021-11-17Update required saemix version, update testsJohannes Ranke5-1463/+1463
2021-09-16Merge branch 'master' into nlmixrJohannes Ranke1-1/+1
2021-09-15Update test result to corrected data, version bumpJohannes Ranke1-1/+1
2021-07-23Merge branch 'master' into nlmixrJohannes Ranke20-10/+8461
After the merge, run make test and accept the new snapshot for the mixed model fit for an nlme object
2021-07-23Update vdiffr tests for version 1.0Johannes Ranke18-10/+5248
2021-06-17Let backtransform_odeparms handle nlmixr formation fractionsJohannes Ranke1-97/+97
Also adapt summary.nlmixr.mmkin to correctly handle the way formation fractions are translated to nlmixr
2021-06-16Translate formation fractions to nlmixr languageJohannes Ranke1-0/+99
Works for the dimethenamid data, at least for FOCEI. Very little testing yet. The summary function does not yet handle the new transformations of formation fractions (that are in fact very old, as they were used in the very first version of mkin). The test file has no tests yet, just some code that may be used for testing.
2021-06-12Small cosmeticsJohannes Ranke1-1/+1
2021-03-09Some improvements for borderline casesJohannes Ranke8-73/+98
- fit_with_errors for saem() - test_log_parms for mean_degparms() and saem()
2021-02-06Reintroduce interface to saemixJohannes Ranke4-1/+240
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-02-06Increase test tolerance for parameter comparisonsv1.0.1Johannes Ranke1-4/+4
Platform dependence also revealed after upgrade to bullseye
2021-02-06Address issue revealed by additional tests on CRANJohannes Ranke3-17/+6
Remove tests relying on non-convergence of the FOMC fit to the FOCUS A dataset, as this is platform dependent. After the upgrade, the fit converges on this system as well, although neither ATLAS is used, nor R was configured disabling long doubles (these were the conditions under which the tests failed on CRAN).
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke4-237/+0
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2021-01-06Make saemix and corresponding tests optionalJohannes Ranke7-50/+71
Address release critical check and test issues
2020-12-19Dimethenamid data, normalisation optionsJohannes Ranke3-2/+11
2020-12-17Remove two skipped (on Travis) tests to reduce noiseJohannes Ranke3-217/+1
2020-12-10Tried to find a fast test for deSolve in saemixJohannes Ranke2-2/+7
But could not find one.
2020-12-10Add a test for saemix with deSolveJohannes Ranke2-8/+16
But skip the test as it takes too long to always run
2020-12-09Some test fixesJohannes Ranke3-6/+4
2020-12-09Add more tests and fix HS in saemJohannes Ranke3-10/+77
2020-12-09Fix a test I accidentally brokeJohannes Ranke1-1/+1
2020-12-09And moreJohannes Ranke3-1/+16
2020-12-09Any yet more testsJohannes Ranke4-3/+17
2020-12-09Update test output and reduce precision for travisJohannes Ranke4-27/+27
2020-12-09More testsJohannes Ranke7-172/+219
2020-12-09Try other mixed fits for vdiffr on travisJohannes Ranke2-4/+22
2020-12-09Test print method for mixed.mmkinJohannes Ranke3-2/+32
2020-12-09Make tests more robust, remove two redundant onesJohannes Ranke4-44/+22
2020-12-09Fix tests and rerunJohannes Ranke4-83/+88

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