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2016-04-21Avoid unnecessary stop in edge case, improve warningsJohannes Ranke1-0/+42
mkinfit: Do not error out in cases where the fit converges, but the Jacobian for the untransformed model cost can not be estimated. Give a warning instead and return NA for the t-test results. summary.mkinfit: Give a warning message when the covariance matrix can not be obtained. A test has been added to containing such an edge case to check that the warnings are correctly issued and the fit does not terminate.
2015-06-21Do the t-test for untransformed parametersv0.9-36Johannes Ranke1-0/+28
2015-06-20Workaround for hadley/testthat#144Johannes Ranke1-0/+4
2015-05-19Include output in README, use mkinsub() in example codeJohannes Ranke1-8/+9
2015-05-15Make mkinmod quiet in testsJohannes Ranke5-8/+8
2015-05-15Add synthetic data generated for UBA expertise, testsJohannes Ranke2-1/+68
The new tests are based on the results documented in the expertise I wrote for the UBA (currently unpublished).
2015-05-15Relax test tolerance for SFORB, FOCUS B and deSolveJohannes Ranke1-2/+2
While this was OK on my local windows machine, the test failed on winbuilder
2015-05-15Make FOMC test for FOCUS A robust towards non-convergenceJohannes Ranke1-5/+4
2015-05-15Also migrate test for mkinpredictJohannes Ranke1-28/+12
2015-05-15Skip testing FOMC with FOCUS A WindowsJohannes Ranke1-9/+15
Testing the package on winbuilder shows that the Port algorithm does not converge on Windows with this combination, which is not a problem as the FOMC model is not appropriate for the dataset anyways.
2015-05-15Finished migration from RUnit to testthatJohannes Ranke6-315/+363
2015-05-14Start of migration from RUnit to testthatJohannes Ranke6-42/+427
2014-08-25Bug fix and unit tests for mkinerrminJohannes Ranke1-1/+0
See NEWS.md for details
2013-11-11- Add a simple makefilejranke1-8/+0
- Add a .Rbuildignore file - Clean up unit tests a bit - Test the gwidgets notebook from the knitr demo git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@150 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-03-15Update kinfit and mkin to the latest version published on BerliOS.jranke1-12/+5
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@17 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2010-05-11Initial upload of the upcoming multicompartment version of kinfit.jranke1-0/+58
Some functionality is still missing (chi2), some may never be implemented (FOMC model), but in general it is much more powerful than kinfit, owing to the powerful FME package. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@8 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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