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2019-05-02Remove reference to archived kinfit packageJohannes Ranke1-65/+70
from vignettes/mkin.Rmd Static documentation rebuilt by pkgdown
2019-04-04Direct error model fitting worksJohannes Ranke1-46/+56
- No IRLS required - Removed optimization algorithms other than Port - Removed the dependency on FME - Fitting the error model 'obs' is much faster for the FOCUS_2006_D dataset and the FOMC_SFO model (1 second versus 3.4 seconds) - Vignettes build slower. Compiled models needs 3 minutes instead of 1.5 - For other vignettes, the trend is less clear. Some fits are faster, even for error_model = "const". FOCUS_Z is faster (34.9 s versus 44.1 s) - Standard errors and confidence intervals are slightly smaller - Removed code for plotting during the fit, as I hardly ever used it - Merged the two cost functions (using transformed and untransformed parameters) into one log-likelihood function
2019-01-31Restore NAMESPACEJohannes Ranke1-55/+383
which was accidentally overwritten by pkgdown -> roxygen
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke1-54/+50
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-01-14Load mkin quietly in vignettesJohannes Ranke1-8/+8
Static documentation articles rebuilt by pkgdown::build_articles()
2017-11-16Use html_vignette for FOCUS_D vignette, fix addressv0.9.46.3Johannes Ranke1-125/+54
Static documentation articles rebuilt by pkgdown::build_articles()
2017-07-21Fix another URL, vignette builder, rebuildJohannes Ranke1-9/+9
2017-05-05Static docs except articles rebuilt with current pkgdownJohannes Ranke1-10/+10
2016-11-18Fix links in README, configure navbar, rebuild docsJohannes Ranke1-10/+15
2016-11-17Use plot_sep in FOCUS D vignetteJohannes Ranke1-15/+18
2016-10-22Update way to specify encoding, improve FOCUS_L TOCJohannes Ranke1-16/+13
2016-09-28Add drat target and rebuild for dratJohannes Ranke1-0/+337
2016-09-10Static documentation rebuilt with current staticdocsJohannes Ranke1-332/+0
Using hadley/staticdocs commit #8c1069d from 8 days ago
2016-09-10Static documentation rebuilt by staticdocs::build_site()Johannes Ranke1-7/+7
2016-06-28Bump version for new release, rebuild static docsJohannes Ranke1-4/+4
The test test_FOMC_ill-defined leads to errors on several architectures/distributions, as apparent from CRAN checks, so we need a new release. Static documentation rebuilt by staticdocs::build_site()
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke1-11/+6
2016-06-28Attempts to reduce vignette sizeJohannes Ranke1-7/+12
Reducing the size of some figures and switching of retina figures in the preamble only gives a small decrease in vignette size, but may be enough to get the size of the doc directory below 5 MB to avoid the NOTE in the corresponding check (which I did not get locally, nor on winbuilder using r-devel.
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke1-3/+3
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke1-3/+3
2016-06-28Avoid multicore fits in vignettes for passing CRAN checksJohannes Ranke1-16/+73
Also a small fix to the FOCUS Z vignette, and an update of the static documentation generated by staticdocs.
2016-03-24Static documentation rebuilt by staticdocs::build_site()v0.9.42Johannes Ranke1-10/+10
2016-03-23Added 'from_max_mean' to 'mkinfit'.Johannes Ranke1-9/+9
- Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel
2015-12-09Static documentation rebuilt by staticdocs::build_site()Johannes Ranke1-2/+2
2015-11-13Add plots to compiled_models vignette, rebuild staticdocsJohannes Ranke1-2/+2
2015-11-09Rebuild vignettes and static documentationJohannes Ranke1-2/+2
2015-11-09Export print.mkinds and rebuild vignettesJohannes Ranke1-2/+2
2015-07-21Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-2/+2
r-forge
2015-07-20Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-5/+5
r-forge
2015-07-20Avoid error message for SFORB in endpoints, updatesJohannes Ranke1-6/+6
2015-06-26Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-39Johannes Ranke1-3/+3
r-forge
2015-06-26Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-10/+5
r-forge
2015-06-26Pass R CMD check --as-cran, vignette rebuildJohannes Ranke1-9/+14
2015-06-23Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-38Johannes Ranke1-4/+4
r-forge
2015-06-23Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-37Johannes Ranke1-3/+3
r-forge
2015-06-23Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-3/+3
r-forge
2015-06-23Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-7/+7
r-forge
2015-06-22Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-3/+3
r-forge
2015-06-22Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-8/+5
r-forge
2015-06-22Version bump, correct benchmark in vignette/compiled_modelsJohannes Ranke1-248/+83
Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed.
2015-06-21Rebuild vignettes with the released package installedJohannes Ranke1-3/+3
2015-06-21Vignettes as rebuilt for the static documentation for r-forgeJohannes Ranke1-3/+3
2015-06-21Do the t-test for untransformed parametersv0.9-36Johannes Ranke1-29/+21
2015-06-05FOCUS D vignette generated from MakefileJohannes Ranke1-83/+248
2015-06-05Add a simple vignette with an evaluation of FOCUS DJohannes Ranke1-0/+286

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