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path: root/vignettes/compiled_models.Rmd
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2016-11-17Remove trailing whitespace, clean headersJohannes Ranke1-11/+11
Also ignore test.R in the top level directory, as it is not meant to be public
2016-11-04Shorten headings for better look with pkgdownJohannes Ranke1-2/+2
2016-10-22Update way to specify encoding, improve FOCUS_L TOCJohannes Ranke1-1/+1
2016-06-28Attempts to reduce vignette sizeJohannes Ranke1-2/+3
Reducing the size of some figures and switching of retina figures in the preamble only gives a small decrease in vignette size, but may be enough to get the size of the doc directory below 5 MB to avoid the NOTE in the corresponding check (which I did not get locally, nor on winbuilder using r-devel.
2016-06-28Convenience wrapper plot_sep, further vignette updatesJohannes Ranke1-2/+1
2016-03-25Remove outdated reference to the inline packageJohannes Ranke1-2/+1
2016-03-24Address feedback from CRAN submissionJohannes Ranke1-2/+2
- Put the CRAN URL that the badge points to into canonical form. I had missed the requirement to use the canonical form before, as the R CMD check message complained about a (possibily) invalid URL, so I overlooked the explanation later in the check log. Thanks to Uwe for his patience. Fix checked with winbuilder. - Slightly reduced the build time for the compiled_models vignette by skipping the warm-up. 3 repetitions are necessary for the autoplot method to work
2015-11-13Add plots to compiled_models vignette, rebuild staticdocsJohannes Ranke1-15/+22
2015-11-09Re-add the compiled models vignetteJohannes Ranke1-0/+101
This was accidentally deleted in 438a889c37ffdf8f0c6585092da6abdb63b4575e on June 30!
2015-06-30Improve calculation of DT90 in endpoints(), check and testJohannes Ranke1-101/+0
2015-06-23Small documenation changesJohannes Ranke1-2/+3
2015-06-22Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-2/+2
r-forge
2015-06-22Version bump, correct benchmark in vignette/compiled_modelsJohannes Ranke1-18/+29
Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed.
2015-06-21Rebuild vignettes with the released package installedJohannes Ranke1-5/+9
2015-06-20Low-level generation of compiled modelsJohannes Ranke1-7/+5
As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled.
2015-04-18Add a vignette showing the performance of compiled modelsJohannes Ranke1-0/+87

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