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2015-06-22Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-0/+0
r-forge
2015-06-22Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-0/+0
r-forge
2015-06-22Vignettes rebuilt by staticdocs::build_site() for r-forgeJohannes Ranke1-0/+0
2015-06-22Version bump, correct benchmark in vignette/compiled_modelsJohannes Ranke1-0/+0
Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed.
2015-06-21Rebuild vignettes with the released package installedJohannes Ranke1-0/+0
2015-06-21Vignettes as rebuilt for the static documentation for r-forgeJohannes Ranke1-0/+0
2015-06-21Do the t-test for untransformed parametersv0.9-36Johannes Ranke1-0/+0
2015-05-15Update of vignettes during staticdoc documentationJohannes Ranke1-0/+0
2014-12-18Updated vignettes during staticdoc generationJohannes Ranke1-0/+0
2014-11-21Update date and static docs for release to CRANv0.9-34Johannes Ranke1-0/+0
2014-11-12Merge branch 'master' into ioreJohannes Ranke1-0/+0
2014-10-11Updated vignettes by building static documentationJohannes Ranke1-0/+0
2014-07-24Update vignettes with 0.9-32 just released to CRANJohannes Ranke1-0/+0
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke1-0/+0
- The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes
2014-07-17Handle non-convergence and maximum number of iterationsJohannes Ranke1-0/+0
For details see NEWS.md
2014-07-14Vignettes as just synced to the static documentation on r-forgeJohannes Ranke1-0/+0
2014-07-14Merge bugfix branch 'master' into ioreJohannes Ranke1-0/+0
Add IORE support to mkinerrmin
2014-07-14Bugfix release version 0.9-31Johannes Ranke1-0/+0
2014-07-11Improve formatting in FOCUS_L vignette, rebuild vignettesJohannes Ranke1-0/+0
2014-07-02Update of vignettesJohannes Ranke1-0/+0
2014-07-02Update vignettes - working flawlessly now!Johannes Ranke1-0/+0
2014-06-27Reorder endpoints in R/endpoints.R, update vignettesJohannes Ranke1-0/+0
2014-06-27Vignette rebuilds commited to be in sync with static docsJohannes Ranke1-0/+0
2014-06-26Updated vignettes by building static documentationJohannes Ranke1-0/+0
2014-06-26Calculate additional DT50 values for non-SFO modelsJohannes Ranke1-0/+0
2014-05-20Update of the static documentationJohannes Ranke1-0/+0
2014-05-20Step back regarding confidence intervals of formation fractionsJohannes Ranke1-0/+0
- Don't give confidence intervals for formation fractions that belong to a set, only for single formation fractions - Update the vignette with history and background - Correct 'isotropic' into 'isometric' in the ilr documentation, the README and the comments in transform_odeparms - Candidate for release to CRAN
2014-05-08Support building static documentation, build itJohannes Ranke1-0/+0
2014-05-05Update of vignettesJohannes Ranke1-0/+0
2013-11-17Conflicts:jranke1-0/+0
README.md TODO git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@163 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Remove vignette PDFs to have them rebuilt on every buildjranke1-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@152 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06Update of the vignettesjranke1-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@140 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-04-14- Update the TODO list, setting some requirements for version 1.0jranke1-0/+0
- Check that initial values specified using parms.ini are actually needed for the model, stop otherwise - List all formation fractions in the same place in the summary, also if they were fitted in the model - Include an FOMC model coupled to two metabolites in the unit tests - Some updates needed because of the above - Update of static documentation including the vignettes - Update of the mkin vignettes in the vignettes directory git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@82 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-05Update of vignettes and static HTML documentationjranke1-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@75 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-05- Calculate confidence intervals for parameters based on the t distributionjranke1-0/+0
Thanks to the CAKE developers at Tessella for the call to qt() - Calculate asymetric confidence intervals for backtransformed parameters - Overhaul and recompile vignettes git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@74 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-18- Completion of the multicompartment part of the mkin examples vignettejranke1-0/+0
- Fix to chi2 error level calculation by correctly returning backtransformed parameters as bparms.optim and bparms.fixed - Adaptations of unit tests, summary and plot functions git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@67 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-17- Removed vignette files that are built during generationjranke1-0/+0
- Updated the staticdoc documentation git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@63 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-09-20Some updates of the mkin vignettejranke1-0/+0
Added the kinfit vignette file to the repository git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@57 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-06-28Delete the PDF versions of the vignette to have them rebuilt on r-forge/CRANjranke1-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@46 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-06-26- Created an html index instead of a php indexjranke1-0/+0
- Rebuilt the mkin documentation git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@44 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-06-25- Document endpoints() functionjranke1-0/+0
- Fix unit tests that were broken by introduction of the endpoints function - Small documentation fixes - Format output of backtransformed parameters - Integrate snippet for making static documentation using staticdocs by Hadley Wickham git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@41 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-04-10- Fitting and summaries now work with the new parameter transformations.jranke1-0/+0
- The SFORB models with metabolites is broken (see TODO) - Moved the vignette to the location recommended since R 2.14 - Added the missing documentation - Commented out the schaefer_complex_case test, as this version of mkin is not able to fit a model without sink and therefore mkin estimated parameters are quite different git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@22 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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