aboutsummaryrefslogtreecommitdiff
path: root/vignettes/web_only/benchmarks.html
AgeCommit message (Collapse)AuthorFilesLines
2022-11-16We get about 25% performance gainJohannes Ranke1-2/+89
with the custom lsoda call, avoiding repeated getNativeSymbolInfo calls. It's just that we should not be calling foreign functions from different packages, because the may change without notice. Using getNativeSymbolInfo for "call_lsoda" avoids the CRAN note, and a similar call could probably be used for "unlock_solver", avoiding the NOTE in checks for cran, but we should not do this in a CRAN package.
2022-07-14Improve readability of benchmark code shown in vignetteJohannes Ranke1-17/+23
2022-07-12Rerun benchmarks on desktop computerJohannes Ranke1-11/+40
2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke1-12/+41
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-07-01Rerun benchmarks with R 4.2.1 and openblas-serialJohannes Ranke1-11/+11
After confirming that lapack versus atlas versus openblas results are quite similar, and therefore not responsible for the differences between R 4.1.3 and R 4.2.1
2022-07-01Add benchmarks on laptop with R 4.1.3 and 4.2.1Johannes Ranke1-45/+74
2022-07-01Add R version to data in benchmark vignetteJohannes Ranke1-0/+2190
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-2005/+0
This also adds the first benchmark results obtained on my laptop system
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-20/+122
Also bump version to 1.0.3.
2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-80/+56
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Improve formatting of benchmark vignetteJohannes Ranke1-30/+168
2020-05-12Update vignettes and docsJohannes Ranke1-97/+82
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-11/+11
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-10Default to analytical for coupled models if availableJohannes Ranke1-131/+112
This revealed that transforming rates is necessary for fitting the analytical solution of the SFO-SFO model to the FOCUS D dataset. Benchmarks show that fitting coupled models with deSolve got a bit slower through the latest changes
2019-05-02Prepare for CRAN releaseJohannes Ranke1-27/+33
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-0/+1817
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit

Contact - Imprint