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2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke1-12/+41
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-07-01Rerun benchmarks with R 4.2.1 and openblas-serialJohannes Ranke1-11/+11
After confirming that lapack versus atlas versus openblas results are quite similar, and therefore not responsible for the differences between R 4.1.3 and R 4.2.1
2022-07-01Add benchmarks on laptop with R 4.1.3 and 4.2.1Johannes Ranke1-45/+74
2022-07-01Add R version to data in benchmark vignetteJohannes Ranke1-0/+2190
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-2005/+0
This also adds the first benchmark results obtained on my laptop system
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-20/+122
Also bump version to 1.0.3.
2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-80/+56
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Improve formatting of benchmark vignetteJohannes Ranke1-30/+168
2020-05-12Update vignettes and docsJohannes Ranke1-97/+82
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-11/+11
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-10Default to analytical for coupled models if availableJohannes Ranke1-131/+112
This revealed that transforming rates is necessary for fitting the analytical solution of the SFO-SFO model to the FOCUS D dataset. Benchmarks show that fitting coupled models with deSolve got a bit slower through the latest changes
2019-05-02Prepare for CRAN releaseJohannes Ranke1-27/+33
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-0/+1817
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit

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