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2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-80/+56
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Improve formatting of benchmark vignetteJohannes Ranke1-30/+168
2020-05-12Update vignettes and docsJohannes Ranke1-97/+82
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-11/+11
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-10Default to analytical for coupled models if availableJohannes Ranke1-131/+112
This revealed that transforming rates is necessary for fitting the analytical solution of the SFO-SFO model to the FOCUS D dataset. Benchmarks show that fitting coupled models with deSolve got a bit slower through the latest changes
2019-05-02Prepare for CRAN releaseJohannes Ranke1-27/+33
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-0/+1817
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit

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