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2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke1-0/+0
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2023-04-16Complete rebuild of static docsJohannes Ranke1-0/+0
2023-02-17Update online docs, fix bug that surfacedJohannes Ranke1-0/+0
2023-02-17Update benchmark results for 7950XJohannes Ranke1-0/+0
2023-02-17Rethink versioning and remove 7950X benchmarksJohannes Ranke1-0/+0
I will add benchmark data for 1.2.0, 1.2.2 and 1.2.3 for better comparison
2023-02-17Finish adapting to upcoming deSolveJohannes Ranke1-0/+0
2023-02-13WIP adapting to new deSolve with faster lsodaJohannes Ranke1-0/+0
2023-01-09Prebuilt PDF vignettes, summary_listingJohannes Ranke1-0/+0
2022-11-24Start online docs of the development versionJohannes Ranke1-0/+0
2022-11-17Complete update of online docs for v1.2.0Johannes Ranke1-0/+0
2022-11-15Import saemix for easier profiling, update online docsJohannes Ranke1-0/+0
2022-11-14Update online docsJohannes Ranke1-0/+0
2022-11-01Update online docsJohannes Ranke1-0/+0
2022-09-16Improve docs and update pkgdownJohannes Ranke1-0/+0
2022-08-10Change dev branch used for docs, update static docsJohannes Ranke1-0/+0
2022-07-22Update static docsJohannes Ranke1-0/+0
2022-07-14Improve readability of benchmark code shown in vignetteJohannes Ranke1-0/+0
2022-07-12Rerun benchmarks on desktop computerJohannes Ranke1-0/+0
2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke1-0/+0
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-07-01Sensitivity of AIC values in DMTA vignette to BLAS versionJohannes Ranke1-0/+0
2022-07-01Rerun benchmarks with R 4.2.1 and openblas-serialJohannes Ranke1-0/+0
After confirming that lapack versus atlas versus openblas results are quite similar, and therefore not responsible for the differences between R 4.1.3 and R 4.2.1
2022-07-01Update benchmark article in online docsJohannes Ranke1-0/+0
2022-07-01Add benchmarks on laptop with R 4.1.3 and 4.2.1Johannes Ranke1-0/+0
2022-07-01Add R version to data in benchmark vignetteJohannes Ranke1-0/+0
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-0/+0
This also adds the first benchmark results obtained on my laptop system
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-0/+0
2021-03-31Bug fix in plot.mkinfitJohannes Ranke1-0/+0
In residual plots, use xlab and xlim if appropriate
2021-02-15Correct grant numbers in README, update docsJohannes Ranke1-0/+0
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-0/+0
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-0/+0
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-11-30Complete rebuild of static docs of dev versionJohannes Ranke1-0/+0
2020-11-19Depend on parallel, doc improvementsJohannes Ranke1-0/+0
By depending on parallel instead of importing it, functions to set up and stop a cluster are always available when mkin is loaded. The use of multicore processing in mmkin on Windows is now documented in the help file, which brings mkin closer to a version 1.0 #9.
2020-11-06Update benchmarks for dev versionJohannes Ranke1-0/+0
2020-10-15Update online docs for release versionJohannes Ranke1-0/+0
2020-10-08Fix issues for releaseJohannes Ranke1-0/+0
2020-05-27Change dev version label to info colorJohannes Ranke1-0/+0
instead of the orange danger color.
2020-05-27Create up to date pkgdown docs in development modeJohannes Ranke1-0/+0
2020-05-14Test markdown link, article update due to .rmd extensionJohannes Ranke1-0/+0
2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-0/+0
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Update pkgdownJohannes Ranke1-0/+0
2020-05-12Improve formatting of benchmark vignetteJohannes Ranke1-0/+0
2020-05-12Update vignettes and docsJohannes Ranke1-0/+0
2019-05-02Prepare for CRAN releaseJohannes Ranke1-0/+0
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs

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