From 0220b25f01a4451fa44a7b2f30f5849c4d822a9c Mon Sep 17 00:00:00 2001
From: Johannes Ranke
Date: Fri, 1 Nov 2019 15:39:12 +0100
Subject: Another documentation fix
---
R/confint.mkinfit.R | 5 ++---
docs/reference/confint.mkinfit.html | 9 ++++-----
man/confint.mkinfit.Rd | 5 ++---
3 files changed, 8 insertions(+), 11 deletions(-)
diff --git a/R/confint.mkinfit.R b/R/confint.mkinfit.R
index 07614306..84183808 100644
--- a/R/confint.mkinfit.R
+++ b/R/confint.mkinfit.R
@@ -27,9 +27,8 @@
#' @param backtransform If we approximate the likelihood in terms of the
#' transformed parameters, should we backtransform the parameters with
#' their confidence intervals?
-#' @param cores The number of cores to be used for multicore processing. This
-#' is only used when the \code{cluster} argument is \code{NULL}. On Windows
-#' machines, cores > 1 is not supported.
+#' @param cores The number of cores to be used for multicore processing.
+#' On Windows machines, cores > 1 is currently not supported.
#' @param quiet Should we suppress the message "Profiling the likelihood"
#' @return A matrix with columns giving lower and upper confidence limits for
#' each parameter.
diff --git a/docs/reference/confint.mkinfit.html b/docs/reference/confint.mkinfit.html
index 6015fbf6..13662adf 100644
--- a/docs/reference/confint.mkinfit.html
+++ b/docs/reference/confint.mkinfit.html
@@ -203,9 +203,8 @@ their confidence intervals?
cores |
- The number of cores to be used for multicore processing. This
-is only used when the cluster argument is NULL . On Windows
-machines, cores > 1 is not supported. |
+ The number of cores to be used for multicore processing.
+On Windows machines, cores > 1 is currently not supported. |
quiet |
@@ -255,13 +254,13 @@ machines, cores > 1 is not supported.
use_of_ff = "max", quiet = TRUE)
f_d_1 <- mkinfit(SFO_SFO, subset(FOCUS_2006_D, value != 0), quiet = TRUE)
system.time(ci_profile <- confint(f_d_1, method = "profile", cores = 1, quiet = TRUE))#> User System verstrichen
-#> 51.297 0.000 51.328
# Using more cores does not save much time here, as parent_0 takes up most of the time
+#> 51.341 0.000 51.370
#> Profiling the likelihood
#> User System verstrichen
-#> 0.006 0.003 11.435
ci_profile
#> 2.5% 97.5%
+#> 0.001 0.007 11.432
ci_profile
#> 2.5% 97.5%
#> parent_0 96.456003650 1.027703e+02
#> k_parent_sink 0.040762501 5.549764e-02
#> k_parent_m1 0.046786482 5.500879e-02
diff --git a/man/confint.mkinfit.Rd b/man/confint.mkinfit.Rd
index e4a60556..60e82517 100644
--- a/man/confint.mkinfit.Rd
+++ b/man/confint.mkinfit.Rd
@@ -36,9 +36,8 @@ applied to the likelihood based on the transformed parameters?}
transformed parameters, should we backtransform the parameters with
their confidence intervals?}
-\item{cores}{The number of cores to be used for multicore processing. This
-is only used when the \code{cluster} argument is \code{NULL}. On Windows
-machines, cores > 1 is not supported.}
+\item{cores}{The number of cores to be used for multicore processing.
+On Windows machines, cores > 1 is currently not supported.}
\item{quiet}{Should we suppress the message "Profiling the likelihood"}
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