From 26a4b9e03fe0f3d8e777ad52f97685a98ff4462e Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Wed, 16 Nov 2022 15:18:10 +0100
Subject: Update docs

---
 docs/dev/news/index.html                 | 8 ++++----
 docs/dev/pkgdown.yml                     | 2 +-
 docs/dev/reference/read_spreadsheet.html | 7 +++++--
 man/read_spreadsheet.Rd                  | 2 +-
 4 files changed, 11 insertions(+), 8 deletions(-)

diff --git a/docs/dev/news/index.html b/docs/dev/news/index.html
index 8448ebc8..3353922b 100644
--- a/docs/dev/news/index.html
+++ b/docs/dev/news/index.html
@@ -89,13 +89,13 @@
 
     <div class="section level2">
 <h2 class="page-header" data-toc-text="1.2.0" id="mkin-120-unreleased">mkin 1.2.0 (unreleased)<a class="anchor" aria-label="anchor" href="#mkin-120-unreleased"></a></h2>
-<ul><li><p>‘R/mhmkin.R’: New method for performing multiple hierarchical mkin fits in one function call, optionally in parallel.</p></li>
+<ul><li><p>‘R/saem.R’: ‘logLik’, ‘update’ and ‘anova’ methods for ‘saem.mmkin’ objects.</p></li>
+<li><p>‘R/saem.R’: Automatic estimation of start parameters for random effects for the case of mkin transformations, nicely improving convergence and reducing problems with iterative ODE solutions.</p></li>
+<li><p>‘R/status.R’: New generic to show status information for fit array objects with methods for ‘mmkin’, ‘mhmkin’ and ‘multistart’ objects.</p></li>
+<li><p>‘R/mhmkin.R’: New method for performing multiple hierarchical mkin fits in one function call, optionally in parallel.</p></li>
 <li><p>‘R/mhmkin.R’: ‘anova.mhmkin’ for conveniently comparing the resulting fits.</p></li>
 <li><p>‘R/illparms.R’: New generic to show ill-defined parameters with methods for ‘mkinfit’, ‘mmkin’, ‘saem.mmkin’ and ‘mhmkin’ objects.</p></li>
 <li><p>‘R/multistart.R’: New method for testing multiple start parameters for hierarchical model fits, with function ‘llhist’ and new generic ‘parplot’ for diagnostics, and new generics ‘which.best’ and ‘best’ for extracting the fit with the highest likelihood</p></li>
-<li><p>‘R/saem.R’: ‘logLik’, ‘update’ and ‘anova’ methods for ‘saem.mmkin’ objects.</p></li>
-<li><p>‘R/saem.R’: Automatic estimation of start parameters for random effects for the case of mkin transformations, nicely improving convergence and reducing problems with iterative ODE solutions.</p></li>
-<li><p>‘R/status.R’: New generic to show status information for fit array objects with methods for ‘mmkin’, ‘mhmkin’ and ‘multistart’ objects.</p></li>
 <li><p>‘R/summary.mmkin.R’: Summary method for mmkin objects.</p></li>
 <li><p>‘R/saem.R’: Implement and test saemix transformations for FOMC and HS. Also, error out if saemix transformations are requested but not supported.</p></li>
 <li><p>‘R/read_spreadsheet.R’: Conveniently read in data from a spreadsheet file.</p></li>
diff --git a/docs/dev/pkgdown.yml b/docs/dev/pkgdown.yml
index 85be66c4..44bd60f5 100644
--- a/docs/dev/pkgdown.yml
+++ b/docs/dev/pkgdown.yml
@@ -13,7 +13,7 @@ articles:
   dimethenamid_2018: web_only/dimethenamid_2018.html
   multistart: web_only/multistart.html
   saem_benchmarks: web_only/saem_benchmarks.html
-last_built: 2022-11-16T09:48Z
+last_built: 2022-11-16T14:17Z
 urls:
   reference: https://pkgdown.jrwb.de/mkin/reference
   article: https://pkgdown.jrwb.de/mkin/articles
diff --git a/docs/dev/reference/read_spreadsheet.html b/docs/dev/reference/read_spreadsheet.html
index 70828765..efba012b 100644
--- a/docs/dev/reference/read_spreadsheet.html
+++ b/docs/dev/reference/read_spreadsheet.html
@@ -64,7 +64,10 @@ factors can be given in columns named 'Temperature' and 'Moisture'."><meta name=
       <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
     </li>
     <li>
-      <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
+      <a href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
+    </li>
+    <li>
+      <a href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
     </li>
   </ul></li>
 <li>
@@ -103,7 +106,7 @@ factors can be given in columns named 'Temperature' and 'Moisture'.</p>
     <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">read_spreadsheet</span><span class="op">(</span></span>
 <span>  <span class="va">path</span>,</span>
 <span>  valid_datasets <span class="op">=</span> <span class="st">"all"</span>,</span>
-<span>  parent_only <span class="op">=</span> <span class="cn">TRUE</span>,</span>
+<span>  parent_only <span class="op">=</span> <span class="cn">FALSE</span>,</span>
 <span>  normalize <span class="op">=</span> <span class="cn">TRUE</span></span>
 <span><span class="op">)</span></span></code></pre></div>
     </div>
diff --git a/man/read_spreadsheet.Rd b/man/read_spreadsheet.Rd
index 147d09bf..41c32108 100644
--- a/man/read_spreadsheet.Rd
+++ b/man/read_spreadsheet.Rd
@@ -7,7 +7,7 @@
 read_spreadsheet(
   path,
   valid_datasets = "all",
-  parent_only = TRUE,
+  parent_only = FALSE,
   normalize = TRUE
 )
 }
-- 
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