From 2fb8a479b9075681ab69063127f4e58a1f9b2052 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 3 Jul 2019 17:04:11 +0200 Subject: Add check and test logs --- check.log | 12 ++---------- test.log | 12 ++++++------ tests/testthat/FOCUS_2006_D.csf | 2 +- 3 files changed, 9 insertions(+), 17 deletions(-) diff --git a/check.log b/check.log index c31c3b2c..1f2ee70f 100644 --- a/check.log +++ b/check.log @@ -56,11 +56,7 @@ Maintainer: ‘Johannes Ranke ’ * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK -* checking examples ... NOTE -Examples with CPU or elapsed time > 5s - user system elapsed -plot.mkinfit 9.307 0.084 9.396 -mkinerrplot 9.150 0.076 9.229 +* checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... SKIPPED * checking for unstated dependencies in vignettes ... OK @@ -69,9 +65,5 @@ mkinerrplot 9.150 0.076 9.229 * checking PDF version of manual ... OK * DONE -Status: 1 NOTE -See - ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’ -for details. - +Status: OK diff --git a/test.log b/test.log index 58aa129f..8926f498 100644 --- a/test.log +++ b/test.log @@ -2,18 +2,18 @@ Loading mkin Testing mkin ✔ | OK F W S | Context ⠏ | 0 | Export dataset for reading into CAKE ✔ | 1 | Export dataset for reading into CAKE - ⠏ | 0 | Error model fitting ⠋ | 1 | Error model fitting ⠹ | 3 | Error model fitting ⠸ | 4 | Error model fitting ⠼ | 5 | Error model fitting ⠴ | 6 | Error model fitting ⠧ | 8 | Error model fitting ⠏ | 10 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 11 | Error model fitting ⠹ | 13 | Error model fitting ⠸ | 14 | Error model fitting ⠼ | 15 | Error model fitting ⠴ | 16 | Error model fitting ⠦ | 17 | Error model fitting ⠧ | 18 | Error model fitting ⠇ | 19 | Error model fitting ⠏ | 20 | Error model fitting ✔ | 20 | Error model fitting [414.2 s] + ⠏ | 0 | Error model fitting ⠋ | 1 | Error model fitting ⠹ | 3 | Error model fitting ⠸ | 4 | Error model fitting ⠼ | 5 | Error model fitting ⠴ | 6 | Error model fitting ⠧ | 8 | Error model fitting ⠏ | 10 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 10 1 | Error model fitting ⠋ | 11 | Error model fitting ⠹ | 13 | Error model fitting ⠸ | 14 | Error model fitting ⠼ | 15 | Error model fitting ⠴ | 16 | Error model fitting ⠦ | 17 | Error model fitting ⠧ | 18 | Error model fitting ⠇ | 19 | Error model fitting ⠏ | 20 | Error model fitting ✔ | 20 | Error model fitting [414.1 s] ⠏ | 0 | Calculation of FOCUS chi2 error levels ⠋ | 1 | Calculation of FOCUS chi2 error levels ⠹ | 3 | Calculation of FOCUS chi2 error levels ⠼ | 5 | Calculation of FOCUS chi2 error levels ✔ | 5 | Calculation of FOCUS chi2 error levels [3.5 s] ⠏ | 0 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠋ | 1 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠙ | 2 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠸ | 4 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠇ | 9 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.7 s] ⠏ | 0 | Test fitting the decline of metabolites from their maximum ⠋ | 1 | Test fitting the decline of metabolites from their maximum ⠹ | 3 | Test fitting the decline of metabolites from their maximum ⠼ | 5 | Test fitting the decline of metabolites from their maximum ✔ | 6 | Test fitting the decline of metabolites from their maximum [0.9 s] ⠏ | 0 | Fitting the logistic model ⠋ | 1 | Fitting the logistic model ✔ | 1 | Fitting the logistic model [0.9 s] ⠏ | 0 | Test dataset class mkinds used in gmkin ✔ | 1 | Test dataset class mkinds used in gmkin - ⠏ | 0 | Special cases of mkinfit calls ⠋ | 1 | Special cases of mkinfit calls ⠇ | 9 | Special cases of mkinfit calls ⠏ | 10 | Special cases of mkinfit calls ⠋ | 11 | Special cases of mkinfit calls ⠙ | 12 | Special cases of mkinfit calls ✔ | 12 | Special cases of mkinfit calls [2.6 s] + ⠏ | 0 | Special cases of mkinfit calls ⠋ | 1 | Special cases of mkinfit calls ⠇ | 9 | Special cases of mkinfit calls ⠏ | 10 | Special cases of mkinfit calls ⠋ | 11 | Special cases of mkinfit calls ⠙ | 12 | Special cases of mkinfit calls ✔ | 12 | Special cases of mkinfit calls [2.7 s] ⠏ | 0 | mkinmod model generation and printing ⠇ | 9 | mkinmod model generation and printing ✔ | 9 | mkinmod model generation and printing [0.2 s] ⠏ | 0 | Model predictions with mkinpredict ⠋ | 1 | Model predictions with mkinpredict ✔ | 3 | Model predictions with mkinpredict [0.3 s] - ⠏ | 0 | Evaluations according to 2015 NAFTA guidance ⠙ | 2 | Evaluations according to 2015 NAFTA guidance ⠇ | 9 | Evaluations according to 2015 NAFTA guidance ⠏ | 10 | Evaluations according to 2015 NAFTA guidance ⠴ | 16 | Evaluations according to 2015 NAFTA guidance ✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.0 s] - ⠏ | 0 | Fitting of parent only models ⠋ | 1 | Fitting of parent only models ⠙ | 2 | Fitting of parent only models ⠹ | 3 | Fitting of parent only models ⠸ | 4 | Fitting of parent only models ⠼ | 5 | Fitting of parent only models ⠴ | 6 | Fitting of parent only models ⠦ | 7 | Fitting of parent only models ⠧ | 8 | Fitting of parent only models ⠇ | 9 | Fitting of parent only models ⠏ | 10 | Fitting of parent only models ⠋ | 11 | Fitting of parent only models ⠙ | 12 | Fitting of parent only models ⠹ | 13 | Fitting of parent only models ⠴ | 16 | Fitting of parent only models ⠧ | 18 | Fitting of parent only models ⠏ | 20 | Fitting of parent only models ✔ | 21 | Fitting of parent only models [40.7 s] - ⠏ | 0 | Calculation of maximum time weighted average concentrations (TWAs) ⠋ | 1 | Calculation of maximum time weighted average concentrations (TWAs) ⠙ | 2 | Calculation of maximum time weighted average concentrations (TWAs) ⠹ | 3 | Calculation of maximum time weighted average concentrations (TWAs) ⠸ | 4 | Calculation of maximum time weighted average concentrations (TWAs) ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s] + ⠏ | 0 | Evaluations according to 2015 NAFTA guidance ⠙ | 2 | Evaluations according to 2015 NAFTA guidance ⠇ | 9 | Evaluations according to 2015 NAFTA guidance ⠏ | 10 | Evaluations according to 2015 NAFTA guidance ⠴ | 16 | Evaluations according to 2015 NAFTA guidance ✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.1 s] + ⠏ | 0 | Fitting of parent only models ⠋ | 1 | Fitting of parent only models ⠙ | 2 | Fitting of parent only models ⠹ | 3 | Fitting of parent only models ⠸ | 4 | Fitting of parent only models ⠼ | 5 | Fitting of parent only models ⠴ | 6 | Fitting of parent only models ⠦ | 7 | Fitting of parent only models ⠧ | 8 | Fitting of parent only models ⠇ | 9 | Fitting of parent only models ⠏ | 10 | Fitting of parent only models ⠋ | 11 | Fitting of parent only models ⠙ | 12 | Fitting of parent only models ⠹ | 13 | Fitting of parent only models ⠴ | 16 | Fitting of parent only models ⠧ | 18 | Fitting of parent only models ⠏ | 20 | Fitting of parent only models ✔ | 21 | Fitting of parent only models [40.9 s] + ⠏ | 0 | Calculation of maximum time weighted average concentrations (TWAs) ⠋ | 1 | Calculation of maximum time weighted average concentrations (TWAs) ⠙ | 2 | Calculation of maximum time weighted average concentrations (TWAs) ⠹ | 3 | Calculation of maximum time weighted average concentrations (TWAs) ⠸ | 4 | Calculation of maximum time weighted average concentrations (TWAs) ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.3 s] ⠏ | 0 | Summary ✔ | 1 | Summary ⠏ | 0 | Plotting ⠹ | 3 | Plotting ✔ | 4 | Plotting [0.3 s] ⠏ | 0 | AIC calculation ✔ | 2 | AIC calculation @@ -21,7 +21,7 @@ Testing mkin ⠏ | 0 | Results for synthetic data established in expertise for UBA (Ranke 2014) ⠋ | 1 | Results for synthetic data established in expertise for UBA (Ranke 2014) ⠹ | 3 | Results for synthetic data established in expertise for UBA (Ranke 2014) ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.1 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 491.4 s +Duration: 491.6 s OK: 125 Failed: 0 diff --git a/tests/testthat/FOCUS_2006_D.csf b/tests/testthat/FOCUS_2006_D.csf index 668b1151..e7897dc5 100644 --- a/tests/testthat/FOCUS_2006_D.csf +++ b/tests/testthat/FOCUS_2006_D.csf @@ -5,7 +5,7 @@ Description: MeasurementUnits: % AR TimeUnits: days Comments: Created using mkin::CAKE_export -Date: 2019-06-05 +Date: 2019-07-03 Optimiser: IRLS [Data] -- cgit v1.2.1