From 4f75d12774d4060c2cd8e2e17b4ec06cb8dc345f Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 1 Oct 2021 13:52:54 +0200 Subject: Update online docs to 1.0.5 --- docs/404.html | 2 +- docs/articles/index.html | 2 +- docs/authors.html | 2 +- docs/index.html | 4 +-- docs/news/index.html | 9 ++++++- docs/pkgdown.yml | 2 +- docs/reference/dimethenamid_2018.html | 47 ++++++++++++++++------------------- docs/reference/endpoints.html | 2 +- docs/reference/index.html | 2 +- docs/reference/mixed.html | 2 +- docs/reference/mkinmod.html | 6 ++--- docs/reference/nlme.html | 2 +- docs/reference/nlme.mmkin.html | 2 +- docs/reference/plot.mixed.mmkin.html | 2 +- docs/reference/reexports.html | 2 +- 15 files changed, 46 insertions(+), 42 deletions(-) diff --git a/docs/404.html b/docs/404.html index 86397bff..af049fc2 100644 --- a/docs/404.html +++ b/docs/404.html @@ -71,7 +71,7 @@ mkin - 1.0.4 + 1.0.5 diff --git a/docs/articles/index.html b/docs/articles/index.html index 8e05af32..a5852160 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -71,7 +71,7 @@ mkin - 1.0.4 + 1.0.5 diff --git a/docs/authors.html b/docs/authors.html index 533ca458..878acf40 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -71,7 +71,7 @@ mkin - 1.0.4 + 1.0.5 diff --git a/docs/index.html b/docs/index.html index 3e7ca59c..59d4f596 100644 --- a/docs/index.html +++ b/docs/index.html @@ -37,7 +37,7 @@ mkin - 1.0.4 + 1.0.5 @@ -258,7 +258,7 @@ Ranke J, Wöltjen J, Meinecke S (2018) Comparison of software tools for kinetic

Dev status

diff --git a/docs/news/index.html b/docs/news/index.html index 0ac20352..75b701d2 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -71,7 +71,7 @@ mkin - 1.0.4 + 1.0.5 @@ -141,6 +141,13 @@ Source: NEWS.md +
+

+mkin 1.0.5 (2021-09-15)

+ +

mkin 1.0.4 (2021-04-20)

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 12ae2f05..c655c059 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -10,7 +10,7 @@ articles: web_only/NAFTA_examples: NAFTA_examples.html web_only/benchmarks: benchmarks.html web_only/compiled_models: compiled_models.html -last_built: 2021-07-29T08:57Z +last_built: 2021-10-01T11:50Z urls: reference: https://pkgdown.jrwb.de/mkin/reference article: https://pkgdown.jrwb.de/mkin/articles diff --git a/docs/reference/dimethenamid_2018.html b/docs/reference/dimethenamid_2018.html index 3b6ae721..542599da 100644 --- a/docs/reference/dimethenamid_2018.html +++ b/docs/reference/dimethenamid_2018.html @@ -77,7 +77,7 @@ constrained by data protection regulations." /> mkin - 1.0.4 + 1.0.5
@@ -162,13 +162,13 @@ constrained by data protection regulations.

Format

-

An mkindsg object grouping eight datasets with some meta information

+

An mkindsg object grouping seven datasets with some meta information

Source

Rapporteur Member State Germany, Co-Rapporteur Member State Bulgaria (2018) Renewal Assessment Report Dimethenamid-P Volume 3 - B.8 Environmental fate and behaviour Rev. 2 - November 2017 -http://registerofquestions.efsa.europa.eu/roqFrontend/outputLoader?output=ON-5211

+https://open.efsa.europa.eu/study-inventory/EFSA-Q-2014-00716

Details

The R code used to create this data object is installed with this package @@ -177,33 +177,30 @@ specific pieces of information in the comments.

Examples

print(dimethenamid_2018)
-
#> <mkindsg> holding 8 mkinds objects
+
#> <mkindsg> holding 7 mkinds objects
 #> Title $title:  Aerobic soil degradation data on dimethenamid-P from the EU assessment in 2018 
 #> Occurrence of observed compounds $observed_n:
 #> DMTAP   M23   M27   M31  DMTA 
-#>     4     7     7     7     4 
+#>     3     7     7     7     4 
 #> Time normalisation factors $f_time_norm:
-#> [1] 1.0000000 0.9706477 0.9706477 1.2284784 1.2284784 0.6233856 0.7678922
-#> [8] 0.6733938
+#> [1] 1.0000000 0.9706477 1.2284784 1.2284784 0.6233856 0.7678922 0.6733938
 #> Meta information $meta:
-#>                       study  usda_soil_type study_moisture_ref_type
-#> Calke         Unsworth 2014      Sandy loam                     pF2
-#> Borstel 1 Staudenmaier 2013            Sand                     pF1
-#> Borstel 2 Staudenmaier 2009            Sand                     pF1
-#> Elliot 1         Wendt 1997       Clay loam                   pF2.5
-#> Elliot 2         Wendt 1997       Clay loam                   pF2.5
-#> Flaach           König 1996 Sandy clay loam                     pF1
-#> BBA 2.2          König 1995      Loamy sand                     pF1
-#> BBA 2.3          König 1995      Sandy loam                     pF1
-#>           rel_moisture study_ref_moisture temperature
-#> Calke             1.00                 NA          20
-#> Borstel 1         0.50              23.00          20
-#> Borstel 2         0.50              23.00          20
-#> Elliot 1          0.75              33.37          23
-#> Elliot 2          0.75              33.37          23
-#> Flaach            0.40                 NA          20
-#> BBA 2.2           0.40                 NA          20
-#> BBA 2.3           0.40                 NA          20
+#> study usda_soil_type study_moisture_ref_type rel_moisture +#> Calke Unsworth 2014 Sandy loam pF2 1.00 +#> Borstel Staudenmaier 2009 Sand pF1 0.50 +#> Elliot 1 Wendt 1997 Clay loam pF2.5 0.75 +#> Elliot 2 Wendt 1997 Clay loam pF2.5 0.75 +#> Flaach König 1996 Sandy clay loam pF1 0.40 +#> BBA 2.2 König 1995 Loamy sand pF1 0.40 +#> BBA 2.3 König 1995 Sandy loam pF1 0.40 +#> study_ref_moisture temperature +#> Calke NA 20 +#> Borstel 23.00 20 +#> Elliot 1 33.37 23 +#> Elliot 2 33.37 23 +#> Flaach NA 20 +#> BBA 2.2 NA 20 +#> BBA 2.3 NA 20 diff --git a/docs/reference/index.html b/docs/reference/index.html index 36ef6367..ff7a4198 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -71,7 +71,7 @@ mkin - 1.0.4 + 1.0.5 diff --git a/docs/reference/mixed.html b/docs/reference/mixed.html index b4f8db16..b3bf35bf 100644 --- a/docs/reference/mixed.html +++ b/docs/reference/mixed.html @@ -72,7 +72,7 @@ mkin - 1.0.4 + 1.0.5 diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html index cda53ce8..f9976c6b 100644 --- a/docs/reference/mkinmod.html +++ b/docs/reference/mkinmod.html @@ -78,7 +78,7 @@ mkinmod." /> mkin - 1.0.4 + 1.0.5 @@ -348,7 +348,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media

parent = mkinsub("SFO", "m1", full_name = "Test compound"), m1 = mkinsub("SFO", full_name = "Metabolite M1"), name = "SFO_SFO", dll_dir = DLL_dir, unload = TRUE, overwrite = TRUE) -
#> Copied DLL from /tmp/RtmpQCjjOu/filef8c1f2031f4ea.so to /home/jranke/.local/share/mkin/SFO_SFO.so
# Now we can save the model and restore it in a new session +
#> Copied DLL from /tmp/Rtmp1acwPp/fileb9e34769fb8fe.so to /home/jranke/.local/share/mkin/SFO_SFO.so
# Now we can save the model and restore it in a new session saveRDS(SFO_SFO.2, file = "~/SFO_SFO.rds") # Terminate the R session here if you would like to check, and then do library(mkin) @@ -397,7 +397,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media

#> }) #> return(predicted) #> } -#> <environment: 0x55555a59b978>
+#> <environment: 0x55555a720040>
# If we have several parallel metabolites # (compare tests/testthat/test_synthetic_data_for_UBA_2014.R) m_synth_DFOP_par <- mkinmod( diff --git a/docs/reference/nlme.html b/docs/reference/nlme.html index c6b43aab..6821bacf 100644 --- a/docs/reference/nlme.html +++ b/docs/reference/nlme.html @@ -75,7 +75,7 @@ datasets. They are used internally by the nlme.mmkin() method." /> mkin - 1.0.4 + 1.0.5
diff --git a/docs/reference/nlme.mmkin.html b/docs/reference/nlme.mmkin.html index 03448606..b3052605 100644 --- a/docs/reference/nlme.mmkin.html +++ b/docs/reference/nlme.mmkin.html @@ -74,7 +74,7 @@ have been obtained by fitting the same model to a list of datasets." /> mkin - 1.0.4 + 1.0.5 diff --git a/docs/reference/plot.mixed.mmkin.html b/docs/reference/plot.mixed.mmkin.html index b75fa6e6..090a644c 100644 --- a/docs/reference/plot.mixed.mmkin.html +++ b/docs/reference/plot.mixed.mmkin.html @@ -72,7 +72,7 @@ mkin - 1.0.4 + 1.0.5 diff --git a/docs/reference/reexports.html b/docs/reference/reexports.html index c6d716a1..e195d8bf 100644 --- a/docs/reference/reexports.html +++ b/docs/reference/reexports.html @@ -79,7 +79,7 @@ below to see their documentation. mkin - 1.0.4 + 1.0.5 -- cgit v1.2.1