From 6860dea6d5ef9dd9375a1cf98cc0bacfaea2dcb4 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sun, 7 Jan 2018 14:18:24 +0100 Subject: Don't run water sediment example to reduce time needed Static documentation except articles rebuilt by pkgdown --- build.log | 7 ++++++- check.log | 18 ++++++++---------- docs/reference/test_data_from_UBA_2014.html | 4 +++- man/test_data_from_UBA_2014.Rd | 2 ++ 4 files changed, 19 insertions(+), 12 deletions(-) diff --git a/build.log b/build.log index a02e93ae..67f4433b 100644 --- a/build.log +++ b/build.log @@ -2,4 +2,9 @@ * preparing ‘mkin’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes -* creating vignettes ... \ No newline at end of file +* creating vignettes ... OK +* checking for LF line-endings in source and make files and shell scripts +* checking for empty or unneeded directories +* looking to see if a ‘data/datalist’ file should be added +* building ‘mkin_0.9.47.1.tar.gz’ + diff --git a/check.log b/check.log index 5d8f5a1a..be621e26 100644 --- a/check.log +++ b/check.log @@ -1,18 +1,14 @@ * using log directory ‘/home/jranke/git/mkin/mkin.Rcheck’ -* using R version 3.4.1 (2017-06-30) +* using R version 3.4.3 (2017-11-30) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using options ‘--no-tests --as-cran’ * checking for file ‘mkin/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘mkin’ version ‘0.9.46’ +* this is package ‘mkin’ version ‘0.9.47.1’ * package encoding: UTF-8 -* checking CRAN incoming feasibility ... WARNING +* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers Maintainer: ‘Johannes Ranke ’ - -Insufficient package version (submitted: 0.9.46, existing: 0.9.46) - -The Date field is over a month old. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK @@ -56,10 +52,12 @@ The Date field is over a month old. * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK -* checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK -* checking examples ... OK +* checking examples ... NOTE +Examples with CPU or elapsed time > 5s + user system elapsed +test_data_from_UBA_2014 5.736 1.888 5.427 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... SKIPPED * checking for unstated dependencies in vignettes ... OK @@ -68,7 +66,7 @@ The Date field is over a month old. * checking PDF version of manual ... OK * DONE -Status: 1 WARNING +Status: 1 NOTE See ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’ for details. diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html index e43e2cf9..e30babc4 100644 --- a/docs/reference/test_data_from_UBA_2014.html +++ b/docs/reference/test_data_from_UBA_2014.html @@ -123,7 +123,8 @@

Examples

- 
  # This is a level P-II evaluation of the dataset according to the FOCUS kinetics
+    

+  # This is a level P-II evaluation of the dataset according to the FOCUS kinetics
   # guidance. Due to the strong correlation of the parameter estimates, the
   # covariance matrix is not returned. Note that level P-II evaluations are
   # generally considered deprecated due to the frequent occurrence of such
@@ -248,6 +249,7 @@
 #> All data 0.09246946       5  6
 #> parent_w 0.06377096       3  3
 #> parent_s 0.20882324       2  3

+
   # This is the evaluation used for the validation of software packages
   # in the expertise from 2014
   m_soil <- mkinmod(parent = mkinsub("SFO", c("M1", "M2")),
diff --git a/man/test_data_from_UBA_2014.Rd b/man/test_data_from_UBA_2014.Rd
index a3543559..6cdc73a7 100644
--- a/man/test_data_from_UBA_2014.Rd
+++ b/man/test_data_from_UBA_2014.Rd
@@ -22,6 +22,7 @@
   zu ModelMaker 4.0, Umweltbundesamt Projektnummer 27452
 }
 \examples{
+  \dontrun{
   # This is a level P-II evaluation of the dataset according to the FOCUS kinetics
   # guidance. Due to the strong correlation of the parameter estimates, the
   # covariance matrix is not returned. Note that level P-II evaluations are
@@ -35,6 +36,7 @@
 
   summary(f_river)$bpar
   mkinerrmin(f_river)
+  }
 
   # This is the evaluation used for the validation of software packages
   # in the expertise from 2014
-- 
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