From 7aecc67a81434c90b5766400e4474d9d9bd3fd63 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 29 Jul 2021 11:26:06 +0200 Subject: Add publication to README, update docs --- README.html | 61 ++++++++++++++++----------------------------- README.md | 7 ++++++ docs/index.html | 5 ++++ docs/pkgdown.yml | 2 +- docs/reference/mkinmod.html | 4 +-- 5 files changed, 36 insertions(+), 43 deletions(-) diff --git a/README.html b/README.html index adb016f9..c0169880 100644 --- a/README.html +++ b/README.html @@ -11,7 +11,7 @@ -README.utf8 +README + diff --git a/README.md b/README.md index 6d71dfc1..8873202b 100644 --- a/README.md +++ b/README.md @@ -208,6 +208,13 @@ to ModelMaker 4.0, 2014-2015) ## References + +
Ranke J, Wöltjen J, Schmidt J, and Comets E (2021) + Taking kinetic evaluations of degradation data to the next level with nonlinear mixed-effects models. + Environments + 8 (8) 71 + doi:10.3390/environments8080071 +
Ranke J, Meinecke S (2019) Error Models for the Kinetic Evaluation of Chemical Degradation Data Environments diff --git a/docs/index.html b/docs/index.html index 72fd88f4..3e7ca59c 100644 --- a/docs/index.html +++ b/docs/index.html @@ -205,6 +205,11 @@ + + + diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 554b3bdc..12ae2f05 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -10,7 +10,7 @@ articles: web_only/NAFTA_examples: NAFTA_examples.html web_only/benchmarks: benchmarks.html web_only/compiled_models: compiled_models.html -last_built: 2021-07-27T13:38Z +last_built: 2021-07-29T08:57Z urls: reference: https://pkgdown.jrwb.de/mkin/reference article: https://pkgdown.jrwb.de/mkin/articles diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html index 441e573e..cda53ce8 100644 --- a/docs/reference/mkinmod.html +++ b/docs/reference/mkinmod.html @@ -348,7 +348,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media

parent =mkinsub("SFO", "m1", full_name ="Test compound"), m1 =mkinsub("SFO", full_name ="Metabolite M1"), name ="SFO_SFO", dll_dir =DLL_dir, unload =TRUE, overwrite =TRUE) -
#> Copied DLL from /tmp/RtmpkoTT3P/filecc29e29e1b974.so to /home/jranke/.local/share/mkin/SFO_SFO.so
# Now we can save the model and restore it in a new session +
#> Copied DLL from /tmp/RtmpQCjjOu/filef8c1f2031f4ea.so to /home/jranke/.local/share/mkin/SFO_SFO.so
# Now we can save the model and restore it in a new session saveRDS(SFO_SFO.2, file = "~/SFO_SFO.rds") # Terminate the R session here if you would like to check, and then do library(mkin) @@ -397,7 +397,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media

#> }) #> return(predicted) #> } -#> <environment: 0x55555a57f6c8>
+#> <environment: 0x55555a59b978>
# If we have several parallel metabolites # (compare tests/testthat/test_synthetic_data_for_UBA_2014.R) m_synth_DFOP_par <- mkinmod( -- cgit v1.2.1
+Ranke J, Wöltjen J, Schmidt J, and Comets E (2021) Taking kinetic evaluations of degradation data to the next level with nonlinear mixed-effects models. Environments 8 (8) 71 doi:10.3390/environments8080071 +
Ranke J, Meinecke S (2019) Error Models for the Kinetic Evaluation of Chemical Degradation Data Environments 6 (12) 124 doi:10.3390/environments6120124