From 9298a503d8de99dad1f61d6eb8bc228dd4acce6b Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 5 Nov 2020 08:31:21 +0100 Subject: Fix link and update docs --- R/nlme.mmkin.R | 4 +- docs/dev/pkgdown.yml | 2 +- docs/dev/reference/Rplot001.png | Bin 14324 -> 19062 bytes docs/dev/reference/Rplot002.png | Bin 57366 -> 24396 bytes docs/dev/reference/Rplot003.png | Bin 55679 -> 6583 bytes docs/dev/reference/Rplot004.png | Bin 57102 -> 28700 bytes docs/dev/reference/mkinfit.html | 167 +++++++++++++++++++++---------------- docs/dev/reference/nlme.mmkin.html | 6 +- docs/dev/reference/saemix.html | 35 ++++---- man/nlme.mmkin.Rd | 4 +- 10 files changed, 121 insertions(+), 97 deletions(-) diff --git a/R/nlme.mmkin.R b/R/nlme.mmkin.R index 6d24a044..526cb10b 100644 --- a/R/nlme.mmkin.R +++ b/R/nlme.mmkin.R @@ -22,7 +22,7 @@ get_deg_func <- function() { #' object. An mmkin row object is essentially a list of mkinfit objects that #' have been obtained by fitting the same model to a list of datasets. #' -#' @param model An \code{\link{mmkin}} row object. +#' @param model An [mmkin] row object. #' @param data Ignored, data are taken from the mmkin model #' @param fixed Ignored, all degradation parameters fitted in the #' mmkin model are used as fixed parameters @@ -46,7 +46,7 @@ get_deg_func <- function() { #' methods that will automatically work on 'nlme.mmkin' objects, such as #' [nlme::intervals()], [nlme::anova.lme()] and [nlme::coef.lme()]. #' @export -#' @seealso \code{\link{nlme_function}} +#' @seealso [nlme_function()] #' @examples #' ds <- lapply(experimental_data_for_UBA_2019[6:10], #' function(x) subset(x$data[c("name", "time", "value")], name == "parent")) diff --git a/docs/dev/pkgdown.yml b/docs/dev/pkgdown.yml index 657aa128..6d59c7cb 100644 --- a/docs/dev/pkgdown.yml +++ b/docs/dev/pkgdown.yml @@ -10,7 +10,7 @@ articles: web_only/NAFTA_examples: NAFTA_examples.html web_only/benchmarks: benchmarks.html web_only/compiled_models: compiled_models.html -last_built: 2020-10-27T14:34Z +last_built: 2020-11-05T07:25Z urls: reference: https://pkgdown.jrwb.de/mkin/reference article: https://pkgdown.jrwb.de/mkin/articles diff --git a/docs/dev/reference/Rplot001.png b/docs/dev/reference/Rplot001.png index f001da49..36b20f09 100644 Binary files a/docs/dev/reference/Rplot001.png and b/docs/dev/reference/Rplot001.png differ diff --git a/docs/dev/reference/Rplot002.png b/docs/dev/reference/Rplot002.png index 8e2eb70d..b568eb1c 100644 Binary files a/docs/dev/reference/Rplot002.png and b/docs/dev/reference/Rplot002.png differ diff --git a/docs/dev/reference/Rplot003.png b/docs/dev/reference/Rplot003.png index 0b173f9e..53415e5d 100644 Binary files a/docs/dev/reference/Rplot003.png and b/docs/dev/reference/Rplot003.png differ diff --git a/docs/dev/reference/Rplot004.png b/docs/dev/reference/Rplot004.png index 4874cd19..ea685493 100644 Binary files a/docs/dev/reference/Rplot004.png and b/docs/dev/reference/Rplot004.png differ diff --git a/docs/dev/reference/mkinfit.html b/docs/dev/reference/mkinfit.html index 90fb26be..39bd12cb 100644 --- a/docs/dev/reference/mkinfit.html +++ b/docs/dev/reference/mkinfit.html @@ -80,7 +80,7 @@ likelihood function." /> mkin - 0.9.50.3 + 0.9.50.4 @@ -128,7 +128,7 @@ likelihood function." />