From de040ca33f6b13ef89be89718510f30631b67903 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 31 Jan 2019 15:35:31 +0100 Subject: Static documentation rebuilt by pkgdown --- DESCRIPTION | 2 +- NAMESPACE | 32 +- _pkgdown.yml | 1 + docs/articles/FOCUS_D.html | 30 +- docs/articles/FOCUS_L.html | 152 ++-- docs/articles/index.html | 23 +- docs/articles/mkin.html | 34 +- docs/articles/twa.html | 20 +- docs/articles/web_only/FOCUS_Z.html | 46 +- docs/articles/web_only/compiled_models.html | 58 +- docs/authors.html | 25 +- docs/index.html | 29 +- docs/news/index.html | 25 +- docs/pkgdown.css | 12 +- docs/pkgdown.js | 19 +- docs/pkgdown.yml | 2 +- docs/reference/AIC.mmkin.html | 49 +- docs/reference/CAKE_export.html | 241 +++++++ docs/reference/DFOP.solution.html | 25 +- docs/reference/Extract.mmkin.html | 435 +---------- docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html | 25 +- docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html | 25 +- docs/reference/FOCUS_2006_HS_ref_A_to_F.html | 25 +- docs/reference/FOCUS_2006_SFO_ref_A_to_F.html | 25 +- docs/reference/FOCUS_2006_datasets.html | 23 +- docs/reference/FOMC.solution.html | 25 +- docs/reference/HS.solution.html | 25 +- docs/reference/IORE.solution.html | 42 +- docs/reference/SFO.solution.html | 25 +- docs/reference/SFORB.solution.html | 25 +- docs/reference/add_err.html | 59 +- docs/reference/endpoints.html | 39 +- docs/reference/geometric_mean.html | 25 +- docs/reference/ilr.html | 44 +- docs/reference/index.html | 29 +- docs/reference/logLik.mkinfit.html | 51 +- docs/reference/max_twa_parent.html | 31 +- docs/reference/mccall81_245T.html | 214 +----- docs/reference/mkin_long_to_wide.html | 51 +- docs/reference/mkin_wide_to_long.html | 37 +- docs/reference/mkinds.html | 23 +- docs/reference/mkinerrmin.html | 35 +- docs/reference/mkinfit.html | 957 ++----------------------- docs/reference/mkinmod.html | 66 +- docs/reference/mkinparplot.html | 34 +- docs/reference/mkinplot.html | 27 +- docs/reference/mkinpredict.html | 214 ++---- docs/reference/mkinresplot.html | 38 +- docs/reference/mkinsub.html | 35 +- docs/reference/mmkin.html | 69 +- docs/reference/plot.mkinfit.html | 46 +- docs/reference/plot.mmkin.html | 42 +- docs/reference/print.mkinds.html | 25 +- docs/reference/print.mkinmod.html | 47 +- docs/reference/schaefer07_complex_case.html | 53 +- docs/reference/sigma_twocomp.html | 23 +- docs/reference/summary.mkinfit.html | 102 +-- docs/reference/synthetic_data_for_UBA.html | 23 +- docs/reference/test_data_from_UBA_2014.html | 73 +- docs/reference/transform_odeparms.html | 353 +-------- 60 files changed, 1242 insertions(+), 3148 deletions(-) create mode 100644 docs/reference/CAKE_export.html diff --git a/DESCRIPTION b/DESCRIPTION index f2f1d6ea..f6b4ac88 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -27,4 +27,4 @@ Encoding: UTF-8 VignetteBuilder: knitr BugReports: http://github.com/jranke/mkin/issues URL: https://cgit.jrwb.de/mkin/about -RoxygenNote: 6.0.1 +RoxygenNote: 6.1.1 diff --git a/NAMESPACE b/NAMESPACE index fc812f46..3286b2b8 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -1,29 +1,5 @@ -# Export all names -exportPattern("^[^\\.]") -S3method(print, mkinds) -S3method(print, mkinmod) -S3method(plot, mkinfit) -S3method(summary, mkinfit) -S3method(print, summary.mkinfit) -S3method(logLik, mkinfit) -S3method(plot, mmkin) -S3method("[", mmkin) -S3method(AIC, mmkin) -S3method(mkinpredict, mkinmod) -S3method(mkinpredict, mkinfit) +# Generated by roxygen2: do not edit by hand -import( - stats, - graphics, - FME, - minpack.lm, - rootSolve, - inline, - parallel -) -importFrom(deSolve, ode) -importFrom(methods, signature) -importFrom(R6, R6Class) -importFrom(grDevices, dev.cur) -importFrom(plyr, join) -importFrom(utils, write.table) +S3method(print,mkinds) +export(mkinds) +importFrom(R6,R6Class) diff --git a/_pkgdown.yml b/_pkgdown.yml index 06e46571..4cc81fad 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -51,6 +51,7 @@ reference: - transform_odeparms - ilr - sigma_twocomp + - CAKE_export - title: Analytical solutions desc: Parent only model solutions contents: diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index 0d463f63..deab980c 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -1,18 +1,18 @@ - + Example evaluation of FOCUS Example Dataset D • mkin - - - + + + - @@ -22,14 +22,15 @@
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index 7759be73..daf887e6 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -1,18 +1,18 @@ - + Example evaluation of FOCUS Laboratory Data L1 to L3 • mkin - - - + + + - @@ -22,14 +22,15 @@
-

Site built with pkgdown.

+

Site built with pkgdown 1.3.0.

- diff --git a/docs/articles/index.html b/docs/articles/index.html index c48dfec7..2da6c874 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -1,6 +1,6 @@ - + @@ -9,17 +9,17 @@ Articles • mkin - + - - + + - + - + @@ -35,7 +35,8 @@ - + + + Introduction to mkin • mkin - - - + + + - @@ -22,14 +22,15 @@
diff --git a/docs/articles/twa.html b/docs/articles/twa.html index 6ba7e1a7..d50b23ba 100644 --- a/docs/articles/twa.html +++ b/docs/articles/twa.html @@ -1,18 +1,18 @@ - + Calculation of time weighted average concentrations with mkin • mkin - - - + + + - @@ -22,14 +22,15 @@
diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html index 6ebe3c73..84bd971f 100644 --- a/docs/articles/web_only/FOCUS_Z.html +++ b/docs/articles/web_only/FOCUS_Z.html @@ -1,18 +1,18 @@ - + Example evaluation of FOCUS dataset Z • mkin - - - + + + - @@ -22,14 +22,15 @@