From 6bc7a6d3e4a849a4b4da49979c577646a541989e Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 27 Jul 2021 15:44:39 +0200 Subject: Publication date for 1.0.4 in NEWS, update docs --- NEWS.md | 2 +- docs/news/index.html | 4 ++-- docs/pkgdown.yml | 2 +- docs/reference/Rplot001.png | Bin 27637 -> 27644 bytes docs/reference/Rplot002.png | Bin 59394 -> 59381 bytes docs/reference/Rplot003.png | Bin 33192 -> 59145 bytes docs/reference/Rplot004.png | Bin 23509 -> 23487 bytes docs/reference/Rplot005.png | Bin 23509 -> 23487 bytes docs/reference/Rplot006.png | Bin 22129 -> 22144 bytes docs/reference/mixed-1.png | Bin 219876 -> 220057 bytes docs/reference/mkinmod.html | 4 ++-- docs/reference/mmkin-1.png | Bin 110844 -> 111120 bytes docs/reference/mmkin-2.png | Bin 107612 -> 108016 bytes docs/reference/mmkin-3.png | Bin 96248 -> 96433 bytes docs/reference/mmkin-4.png | Bin 66653 -> 66723 bytes docs/reference/mmkin-5.png | Bin 65046 -> 65113 bytes docs/reference/mmkin.html | 4 ++-- docs/reference/nlme-1.png | Bin 70244 -> 68943 bytes docs/reference/nlme-2.png | Bin 94239 -> 94409 bytes docs/reference/nlme.mmkin-1.png | Bin 124827 -> 124937 bytes docs/reference/nlme.mmkin-2.png | Bin 169698 -> 169884 bytes docs/reference/nlme.mmkin-3.png | Bin 172809 -> 172866 bytes docs/reference/plot.mixed.mmkin-1.png | Bin 84976 -> 85300 bytes docs/reference/plot.mixed.mmkin-2.png | Bin 174061 -> 174113 bytes 24 files changed, 8 insertions(+), 8 deletions(-) diff --git a/NEWS.md b/NEWS.md index 88509b66..1dd32edb 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# mkin 1.0.4 (Unreleased) +# mkin 1.0.4 (2021-04-20) - All plotting functions setting graphical parameters: Use on.exit() for resetting graphical parameters diff --git a/docs/news/index.html b/docs/news/index.html index 2905c120..0ac20352 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -141,9 +141,9 @@ Source: NEWS.md -
+

-mkin 1.0.4 (Unreleased)

+mkin 1.0.4 (2021-04-20)

  • All plotting functions setting graphical parameters: Use on.exit() for resetting graphical parameters

  • ‘plot.mkinfit’: Use xlab and xlim for the residual plot if show_residuals is TRUE

    • diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 3f97ea94..554b3bdc 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -10,7 +10,7 @@ articles: web_only/NAFTA_examples: NAFTA_examples.html web_only/benchmarks: benchmarks.html web_only/compiled_models: compiled_models.html -last_built: 2021-04-20T14:34Z +last_built: 2021-07-27T13:38Z urls: reference: https://pkgdown.jrwb.de/mkin/reference article: https://pkgdown.jrwb.de/mkin/articles diff --git a/docs/reference/Rplot001.png b/docs/reference/Rplot001.png index 49fb9af1..22eb54d3 100644 Binary files a/docs/reference/Rplot001.png and b/docs/reference/Rplot001.png differ diff --git a/docs/reference/Rplot002.png b/docs/reference/Rplot002.png index 745d583d..8512d4f8 100644 Binary files a/docs/reference/Rplot002.png and b/docs/reference/Rplot002.png differ diff --git a/docs/reference/Rplot003.png b/docs/reference/Rplot003.png index eba202e9..da0a093b 100644 Binary files a/docs/reference/Rplot003.png and b/docs/reference/Rplot003.png differ diff --git a/docs/reference/Rplot004.png b/docs/reference/Rplot004.png index a4f878c8..31771c20 100644 Binary files a/docs/reference/Rplot004.png and b/docs/reference/Rplot004.png differ diff --git a/docs/reference/Rplot005.png b/docs/reference/Rplot005.png index a4f878c8..31771c20 100644 Binary files a/docs/reference/Rplot005.png and b/docs/reference/Rplot005.png differ diff --git a/docs/reference/Rplot006.png b/docs/reference/Rplot006.png index ff8a5d83..4c728f4e 100644 Binary files a/docs/reference/Rplot006.png and b/docs/reference/Rplot006.png differ diff --git a/docs/reference/mixed-1.png b/docs/reference/mixed-1.png index b9454c86..422ab6a0 100644 Binary files a/docs/reference/mixed-1.png and b/docs/reference/mixed-1.png differ diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html index 1e8ad60d..441e573e 100644 --- a/docs/reference/mkinmod.html +++ b/docs/reference/mkinmod.html @@ -348,7 +348,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media

    parent = mkinsub("SFO", "m1", full_name = "Test compound"), m1 = mkinsub("SFO", full_name = "Metabolite M1"), name = "SFO_SFO", dll_dir = DLL_dir, unload = TRUE, overwrite = TRUE) -
#> Copied DLL from /tmp/Rtmp17EVw2/file269cfd5cc541a9.so to /home/jranke/.local/share/mkin/SFO_SFO.so
# Now we can save the model and restore it in a new session +
#> Copied DLL from /tmp/RtmpkoTT3P/filecc29e29e1b974.so to /home/jranke/.local/share/mkin/SFO_SFO.so
# Now we can save the model and restore it in a new session saveRDS(SFO_SFO.2, file = "~/SFO_SFO.rds") # Terminate the R session here if you would like to check, and then do library(mkin) @@ -397,7 +397,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media

#> }) #> return(predicted) #> } -#> <environment: 0x55555c17ae90>
+#> <environment: 0x55555a57f6c8>
# If we have several parallel metabolites # (compare tests/testthat/test_synthetic_data_for_UBA_2014.R) m_synth_DFOP_par <- mkinmod( diff --git a/docs/reference/mmkin-1.png b/docs/reference/mmkin-1.png index f6bb2131..701a6d6a 100644 Binary files a/docs/reference/mmkin-1.png and b/docs/reference/mmkin-1.png differ diff --git a/docs/reference/mmkin-2.png b/docs/reference/mmkin-2.png index 50102a3d..5277b389 100644 Binary files a/docs/reference/mmkin-2.png and b/docs/reference/mmkin-2.png differ diff --git a/docs/reference/mmkin-3.png b/docs/reference/mmkin-3.png index 9aa7f0db..2659cd61 100644 Binary files a/docs/reference/mmkin-3.png and b/docs/reference/mmkin-3.png differ diff --git a/docs/reference/mmkin-4.png b/docs/reference/mmkin-4.png index f4f413d1..ae16ee79 100644 Binary files a/docs/reference/mmkin-4.png and b/docs/reference/mmkin-4.png differ diff --git a/docs/reference/mmkin-5.png b/docs/reference/mmkin-5.png index 48ab2c50..2b9dc831 100644 Binary files a/docs/reference/mmkin-5.png and b/docs/reference/mmkin-5.png differ diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html index caba300e..d7989c6b 100644 --- a/docs/reference/mmkin.html +++ b/docs/reference/mmkin.html @@ -235,9 +235,9 @@ plotting.

time_default
#> user system elapsed -#> 4.656 0.403 1.734
time_1 +#> 4.491 0.397 1.634
time_1
#> user system elapsed -#> 5.627 0.004 5.631
+#> 5.491 0.000 5.492
endpoints(fits.0[["SFO_lin", 2]])
#> $ff #> parent_M1 parent_sink M1_M2 M1_sink diff --git a/docs/reference/nlme-1.png b/docs/reference/nlme-1.png index c41adc27..365aaef0 100644 Binary files a/docs/reference/nlme-1.png and b/docs/reference/nlme-1.png differ diff --git a/docs/reference/nlme-2.png b/docs/reference/nlme-2.png index c0d8e857..40841404 100644 Binary files a/docs/reference/nlme-2.png and b/docs/reference/nlme-2.png differ diff --git a/docs/reference/nlme.mmkin-1.png b/docs/reference/nlme.mmkin-1.png index 90ede880..95adfafb 100644 Binary files a/docs/reference/nlme.mmkin-1.png and b/docs/reference/nlme.mmkin-1.png differ diff --git a/docs/reference/nlme.mmkin-2.png b/docs/reference/nlme.mmkin-2.png index 0d140fd1..53b6fc76 100644 Binary files a/docs/reference/nlme.mmkin-2.png and b/docs/reference/nlme.mmkin-2.png differ diff --git a/docs/reference/nlme.mmkin-3.png b/docs/reference/nlme.mmkin-3.png index 8a60b52b..e87d15e5 100644 Binary files a/docs/reference/nlme.mmkin-3.png and b/docs/reference/nlme.mmkin-3.png differ diff --git a/docs/reference/plot.mixed.mmkin-1.png b/docs/reference/plot.mixed.mmkin-1.png index 65660abe..be3c664a 100644 Binary files a/docs/reference/plot.mixed.mmkin-1.png and b/docs/reference/plot.mixed.mmkin-1.png differ diff --git a/docs/reference/plot.mixed.mmkin-2.png b/docs/reference/plot.mixed.mmkin-2.png index 28168495..933d477b 100644 Binary files a/docs/reference/plot.mixed.mmkin-2.png and b/docs/reference/plot.mixed.mmkin-2.png differ -- cgit v1.2.1