From 062b9cc1d084e8bb5e552076fc48ade4b3050644 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sat, 20 Jun 2015 01:06:24 +0200 Subject: Low-level generation of compiled models As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. --- DESCRIPTION | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) (limited to 'DESCRIPTION') diff --git a/DESCRIPTION b/DESCRIPTION index 59b653f4..b5045e4e 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -3,7 +3,7 @@ Type: Package Title: Routines for Fitting Kinetic Models with One or More State Variables to Chemical Degradation Data Version: 0.9-36 -Date: 2015-05-18 +Date: 2015-06-20 Authors@R: c(person("Johannes", "Ranke", role = c("aut", "cre", "cph"), email = "jranke@uni-bremen.de"), person("Katrin", "Lindenberger", role = "ctb"), @@ -13,14 +13,13 @@ Description: Calculation routines based on the FOCUS Kinetics Report (2006). Includes a function for conveniently defining differential equation models, model solution based on eigenvalues if possible or using numerical solvers and a choice of the optimisation methods made available by the 'FME' package. - If the 'ccSolve' package (https://github.com/karlines/ccSolve), - and a C compiler (on windows: 'Rtools') are installed, differential + If a C compiler (on windows: 'Rtools') are installed, differential equation models are solved using compiled C functions. Please note that no warranty is implied for correctness of results or fitness for a particular purpose. -Depends: minpack.lm, rootSolve +Depends: minpack.lm, rootSolve, inline Imports: FME, deSolve -Suggests: knitr, testthat, microbenchmark, ccSolve +Suggests: knitr, testthat, microbenchmark License: GPL LazyLoad: yes LazyData: yes -- cgit v1.2.1