From 7035cde3a53781721fe15a8893fdf328c789bdd2 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 7 Mar 2022 12:03:40 +0100 Subject: Remove nlmixr interface for release of mkin 1.1.0 I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined). --- NAMESPACE | 15 --------------- 1 file changed, 15 deletions(-) (limited to 'NAMESPACE') diff --git a/NAMESPACE b/NAMESPACE index aa3899ac..c5a4a389 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -8,7 +8,6 @@ S3method(aw,mmkin) S3method(confint,mkinfit) S3method(f_time_norm_focus,mkindsg) S3method(f_time_norm_focus,numeric) -S3method(intervals,nlmixr.mmkin) S3method(intervals,saem.mmkin) S3method(loftest,mkinfit) S3method(logLik,mkinfit) @@ -18,7 +17,6 @@ S3method(mixed,mmkin) S3method(mkinpredict,mkinfit) S3method(mkinpredict,mkinmod) S3method(nlme,mmkin) -S3method(nlmixr,mmkin) S3method(nobs,mkinfit) S3method(parms,mkinfit) S3method(parms,mmkin) @@ -33,17 +31,14 @@ S3method(print,mkinmod) S3method(print,mmkin) S3method(print,nafta) S3method(print,nlme.mmkin) -S3method(print,nlmixr.mmkin) S3method(print,saem.mmkin) S3method(print,summary.mkinfit) S3method(print,summary.nlme.mmkin) -S3method(print,summary.nlmixr.mmkin) S3method(print,summary.saem.mmkin) S3method(residuals,mkinfit) S3method(saem,mmkin) S3method(summary,mkinfit) S3method(summary,nlme.mmkin) -S3method(summary,nlmixr.mmkin) S3method(summary,saem.mmkin) S3method(update,mkinfit) S3method(update,mmkin) @@ -65,7 +60,6 @@ export(get_deg_func) export(ilr) export(intervals) export(invilr) -export(invtffm0) export(loftest) export(logistic.solution) export(lrtest) @@ -94,9 +88,6 @@ export(nafta) export(nlme) export(nlme_data) export(nlme_function) -export(nlmixr) -export(nlmixr_data) -export(nlmixr_model) export(parms) export(plot_err) export(plot_res) @@ -105,19 +96,15 @@ export(saem) export(saemix_data) export(saemix_model) export(sigma_twocomp) -export(tffm0) export(transform_odeparms) import(deSolve) import(graphics) import(nlme) importFrom(R6,R6Class) -importFrom(dplyr,"%>%") importFrom(grDevices,dev.cur) importFrom(lmtest,lrtest) importFrom(methods,signature) importFrom(nlme,intervals) -importFrom(nlmixr,nlmixr) -importFrom(nlmixr,tableControl) importFrom(parallel,detectCores) importFrom(parallel,mclapply) importFrom(parallel,parLapply) @@ -128,7 +115,6 @@ importFrom(stats,aggregate) importFrom(stats,as.formula) importFrom(stats,coef) importFrom(stats,coefficients) -importFrom(stats,confint) importFrom(stats,cov2cor) importFrom(stats,dist) importFrom(stats,dnorm) @@ -148,7 +134,6 @@ importFrom(stats,qnorm) importFrom(stats,qt) importFrom(stats,residuals) importFrom(stats,rnorm) -importFrom(stats,sd) importFrom(stats,shapiro.test) importFrom(stats,update) importFrom(stats,vcov) -- cgit v1.2.1