From 35eaf4f7bac89b249ff488e4e3021d4226ed9e23 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 15 Sep 2021 11:22:36 +0200 Subject: Correction of the dimethenamid dataset The data given in previous mkin versions for "Borstel 2" (Staudenmaier 2013) are in fact a subset of the "Borstel 1" data, with the "Borstel 2" data simply being further analysed for isomer composition by Staudenmaier (2013). While correcting this, the URL of the RAR published by EFSA was updated, as the EFSA Register of Questions was replaced by the Open EFSA portal. This also affects the recent publication in "Environments" [1], where these two datasets were pooled. However, the influence on the final results can be expected to be minimal. Out of the 16 observations for the Borstel soil, five were erroneously duplicated which just changes the weight of the different sampling points and modifies the variance. The conclusions of the publication are qualitative and are not considered to be affected. [1] https://doi.org/10.3390/environments8080071 --- R/dimethenamid_2018.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'R') diff --git a/R/dimethenamid_2018.R b/R/dimethenamid_2018.R index 189da618..1a7e14a2 100644 --- a/R/dimethenamid_2018.R +++ b/R/dimethenamid_2018.R @@ -11,11 +11,11 @@ #' in the 'dataset_generation' directory. In the code, page numbers are given for #' specific pieces of information in the comments. #' -#' @format An [mkindsg] object grouping eight datasets with some meta information +#' @format An [mkindsg] object grouping seven datasets with some meta information #' @source Rapporteur Member State Germany, Co-Rapporteur Member State Bulgaria (2018) #' Renewal Assessment Report Dimethenamid-P Volume 3 - B.8 Environmental fate and behaviour #' Rev. 2 - November 2017 -#' \url{http://registerofquestions.efsa.europa.eu/roqFrontend/outputLoader?output=ON-5211} +#' \url{https://open.efsa.europa.eu/study-inventory/EFSA-Q-2014-00716} #' @examples #' print(dimethenamid_2018) "dimethenamid_2018" -- cgit v1.2.3 From 2e77bf144a81852302571009b1fcd41f021eca4c Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 15 Sep 2021 16:54:49 +0200 Subject: Fix Open EFSA URL, changelog for 1.0.5 The EFSA URL failed on winbuilder because some cookie sets a different domain, so I am now using \href{} with the full link as link text instead of \url{} --- NEWS.md | 4 ++++ R/dimethenamid_2018.R | 2 +- man/dimethenamid_2018.Rd | 2 +- test.log | 8 ++++---- 4 files changed, 10 insertions(+), 6 deletions(-) (limited to 'R') diff --git a/NEWS.md b/NEWS.md index 1dd32edb..e8a57aba 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,7 @@ +# mkin 1.0.5 (2021-09-15) + +- 'dimethenamid_2018': Correct the data for the Borstel soil. The five observations from Staudenmaier (2013) that were previously stored as "Borstel 2" are actually just a subset of the 16 observations in "Borstel 1" which is now simply "Borstel" + # mkin 1.0.4 (2021-04-20) - All plotting functions setting graphical parameters: Use on.exit() for resetting graphical parameters diff --git a/R/dimethenamid_2018.R b/R/dimethenamid_2018.R index 1a7e14a2..0d8f681f 100644 --- a/R/dimethenamid_2018.R +++ b/R/dimethenamid_2018.R @@ -15,7 +15,7 @@ #' @source Rapporteur Member State Germany, Co-Rapporteur Member State Bulgaria (2018) #' Renewal Assessment Report Dimethenamid-P Volume 3 - B.8 Environmental fate and behaviour #' Rev. 2 - November 2017 -#' \url{https://open.efsa.europa.eu/study-inventory/EFSA-Q-2014-00716} +#' \href{https://open.efsa.europa.eu}{https://open.efsa.europa.eu/study-inventory/EFSA-Q-2014-00716} #' @examples #' print(dimethenamid_2018) "dimethenamid_2018" diff --git a/man/dimethenamid_2018.Rd b/man/dimethenamid_2018.Rd index 6c251363..31a05a26 100644 --- a/man/dimethenamid_2018.Rd +++ b/man/dimethenamid_2018.Rd @@ -11,7 +11,7 @@ An \link{mkindsg} object grouping seven datasets with some meta information Rapporteur Member State Germany, Co-Rapporteur Member State Bulgaria (2018) Renewal Assessment Report Dimethenamid-P Volume 3 - B.8 Environmental fate and behaviour Rev. 2 - November 2017 -\url{https://open.efsa.europa.eu/study-inventory/EFSA-Q-2014-00716} +\href{https://open.efsa.europa.eu}{https://open.efsa.europa.eu/study-inventory/EFSA-Q-2014-00716} } \usage{ dimethenamid_2018 diff --git a/test.log b/test.log index 3ab6aa27..717413ae 100644 --- a/test.log +++ b/test.log @@ -18,20 +18,20 @@ Loading required package: parallel ✔ | 10 | Special cases of mkinfit calls [0.3 s] ✔ | 1 | mkinfit features [0.3 s] ✔ | 8 | mkinmod model generation and printing [0.2 s] -✔ | 3 | Model predictions with mkinpredict [0.3 s] +✔ | 3 | Model predictions with mkinpredict [0.4 s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.3 s] ✔ | 9 | Nonlinear mixed-effects models [7.7 s] ✔ | 14 | Plotting [1.1 s] ✔ | 4 | Residuals extracted from mkinfit models ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4 s] -✔ | 7 | Fitting the SFORB model [3.4 s] +✔ | 7 | Fitting the SFORB model [3.5 s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Summary [0.1 s] ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1 s] -✔ | 9 | Hypothesis tests [8.0 s] +✔ | 9 | Hypothesis tests [7.9 s] ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 39.0 s +Duration: 38.8 s [ FAIL 0 | WARN 0 | SKIP 0 | PASS 174 ] -- cgit v1.2.3