From 43c0ae8431440bab723b35909d43f51434288c33 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Sat, 25 Jun 2016 21:07:11 +0200
Subject: Fix the plot margins for combined plots

---
 R/plot.mkinfit.R | 21 +++++++++++++++++++++
 R/plot.mmkin.R   | 18 ++++++++++++++++--
 2 files changed, 37 insertions(+), 2 deletions(-)

(limited to 'R')

diff --git a/R/plot.mkinfit.R b/R/plot.mkinfit.R
index 317c74a3..58ff88bc 100644
--- a/R/plot.mkinfit.R
+++ b/R/plot.mkinfit.R
@@ -103,6 +103,27 @@ plot.mkinfit <- function(x, fit = x,
       ylim_row = ylim
     }
 
+    if (sep_obs) {
+      # Margins for top row of plots when we have more than one row
+      # Reduce bottom margin by 2.1 - hides x axis legend
+      if (plot_row == 1 & n_plot_rows > 1) {
+        par(mar = c(3.0, 4.1, 4.1, 2.1)) 
+      }
+
+      # Margins for middle rows of plots, if any
+      if (plot_row > 1 & plot_row < n_plot_rows) {
+        # Reduce top margin by 2 after the first plot as we have no main title, 
+        # reduced plot height, therefore we need rel.height.middle in the layout
+        par(mar = c(3.0, 4.1, 2.1, 2.1))
+      }
+
+      # Margins for bottom row of plots when we have more than one row
+      if (plot_row == n_plot_rows & n_plot_rows > 1) {
+        # Restore bottom margin for last plot to show x axis legend
+        par(mar = c(5.1, 4.1, 2.1, 2.1))
+      }
+    }
+
     # Set up the main plot if not to be added to an existing plot
     if (add == FALSE) {
       plot(0, type="n", 
diff --git a/R/plot.mmkin.R b/R/plot.mmkin.R
index 7b54be4b..2cbb4a79 100644
--- a/R/plot.mmkin.R
+++ b/R/plot.mmkin.R
@@ -46,15 +46,29 @@ plot.mmkin <- function(x, main = "auto", legends = 1, errmin_var = "All data", e
                  else rep(1, n.fits)
   layout(matrix(1:(2 * n.fits), n.fits, 2, byrow = TRUE), heights = rel.heights)
 
-  par(mar = c(3.0, 4.1, 4.1, 2.1)) # Reduce bottom margin by 2.1 - hides x axis legend
   par(cex = cex)
 
   for (i.fit in 1:n.fits) {
-    if (i.fit == 2) {
+
+    # Margins for top row of plots when we have more than one row
+    # Reduce bottom margin by 2.1 - hides x axis legend
+    if (i.fit == 1 & n.fits > 1) {
+      par(mar = c(3.0, 4.1, 4.1, 2.1)) 
+    }
+
+    # Margins for middle rows of plots, if any
+    if (i.fit > 1 & i.fit < n.fits) {
       # Reduce top margin by 2 after the first plot as we have no main title, 
       # reduced plot height, therefore we need rel.height.middle in the layout
       par(mar = c(3.0, 4.1, 2.1, 2.1))
     }
+
+    # Margins for bottom row of plots when we have more than one row
+    if (i.fit == n.fits & n.fits > 1) {
+      # Restore bottom margin for last plot to show x axis legend
+      par(mar = c(5.1, 4.1, 2.1, 2.1))
+    }
+
     fit <- x[[i.fit]]
     plot(fit, legend = legends == i.fit, ...)
 
-- 
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