From 804a5cb47fcdc823d41c585729ace151b283ca65 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 4 Aug 2023 13:27:41 +0200 Subject: Mesotrione data and vignette The vignette illustrates pH dependent degradation (covariate modelling) with some detail for the parent compound. Also, a bug in the saem method of the illparms function was fixed, which prevented to find ill-defined parameters in cases where e.g. slopes of covariate models have a negative estimate. --- R/illparms.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'R') diff --git a/R/illparms.R b/R/illparms.R index eef4bd33..68a6bff6 100644 --- a/R/illparms.R +++ b/R/illparms.R @@ -106,7 +106,7 @@ illparms.saem.mmkin <- function(object, conf.level = 0.95, random = TRUE, errmod ill_parms <- c(ill_parms, names(which(ill_parms_random))) } if (errmod) { - ill_parms_errmod <- ints$errmod[, "lower"] < 0 & ints$errmod[, "est."] > 0 + ill_parms_errmod <- ints$errmod[, "lower"] < 0 & ints$errmod[, "upper"] > 0 ill_parms <- c(ill_parms, names(which(ill_parms_errmod))) } if (slopes) { @@ -115,7 +115,7 @@ illparms.saem.mmkin <- function(object, conf.level = 0.95, random = TRUE, errmod ci <- object$so@results@conf.int rownames(ci) <- ci$name slope_ci <- ci[slope_names, ] - ill_parms_slopes <- slope_ci[, "lower"] < 0 & slope_ci[, "estimate"] > 0 + ill_parms_slopes <- slope_ci[, "lower"] < 0 & slope_ci[, "upper"] > 0 ill_parms <- c(ill_parms, slope_names[ill_parms_slopes]) } } -- cgit v1.2.1 From b1754e3d1112ea04e2ee4c393581362fb8f605f7 Mon Sep 17 00:00:00 2001 From: Ranke Johannes Date: Mon, 7 Aug 2023 11:06:17 +0200 Subject: Typos --- R/read_spreadsheet.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'R') diff --git a/R/read_spreadsheet.R b/R/read_spreadsheet.R index 1c5508da..bad93d43 100644 --- a/R/read_spreadsheet.R +++ b/R/read_spreadsheet.R @@ -12,7 +12,7 @@ #' to contain name and acronym of the parent compound. #' #' The dataset sheets should be named using the dataset numbers read in from -#' the 'Datasets' sheet, i.e. '1', '2', ... . In each dataset sheet, name +#' the 'Datasets' sheet, i.e. '1', '2', ... . In each dataset sheet, the name #' of the observed variable (e.g. the acronym of the parent compound or #' one of its transformation products) should be in the first column, #' the time values should be in the second colum, and the observed value @@ -26,7 +26,7 @@ #' Their names should preferably not contain special characters like spaces, #' so they can be easily used for specifying covariate models. #' -#' An similar data structure is defined as the R6 class [mkindsg], but +#' A similar data structure is defined as the R6 class [mkindsg], but #' is probably more complicated to use. #' #' @param path Absolute or relative path to the spreadsheet file -- cgit v1.2.1