From 6168089ac43664c10ca2dc1281c8648fbf3b35a9 Mon Sep 17 00:00:00 2001 From: jranke Date: Sun, 14 Apr 2013 12:42:06 +0000 Subject: - Update the TODO list, setting some requirements for version 1.0 - Check that initial values specified using parms.ini are actually needed for the model, stop otherwise - List all formation fractions in the same place in the summary, also if they were fitted in the model - Include an FOMC model coupled to two metabolites in the unit tests - Some updates needed because of the above - Update of static documentation including the vignettes - Update of the mkin vignettes in the vignettes directory git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@82 edb9625f-4e0d-4859-8d74-9fd3b1da38cb --- TODO | 18 +++++++----------- 1 file changed, 7 insertions(+), 11 deletions(-) (limited to 'TODO') diff --git a/TODO b/TODO index c081ee74..25f5478b 100644 --- a/TODO +++ b/TODO @@ -1,18 +1,14 @@ -Must have: -- Some more tests with coupled models with FOMC, DFOP, HS and SFORB for parent -- Some tests with SFORB for metabolites -- Make the "method" argument work again - currently it is being passed both to ode() and modFit() -- Check the contents of the parms.ini argument to mkinfit for arguments that - are not used in the model in order to avoid erroneous chi2 error level - calculations +TODO for version 1.0 +- Transfer (some?) unit tests to examples to make them more easily accessible + for the user - they will be tested during R CMD check anyway +- Let mkin call mkin_wide_to_long automatically, if observed data are suitably defined +- Think about what a user would expect from version 1.0 Nice to have: -- Calculate confidence intervals for DT50 and DT90 values when only one parameter is involved -- Add more unit tests for mkinfit - Improve choice of starting parameters, in order to avoid failure of eigenvalue based solutions due to singular matrix - Consider reverting to deSolve in case eigenvalue based solution fails due to singular matrix -- Reproduce example anaylses (L1, L2, ...) in FOCUS (2006) +- Calculate confidence intervals for DT50 and DT90 values when only one parameter is involved - Calculate transformation only DT50 values (exclude pathways to sink) as additional information -- Generate confidence intervals for DT50 and DT90 values for other cases +- Calculate DT50 values from smaller rate constant/eigenvalue of DFOP, HS and SFORB models - Document assumptions and implications of fitting method used in FME in the package vignette -- cgit v1.2.1