From 0c9b2f0e3c8ce65cb790c9e048476784cbbea070 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Fri, 11 Jun 2021 11:14:45 +0200
Subject: Finished 'summary.nlmixr.mmkin', checks, docs

---
 check.log | 59 +++++++++--------------------------------------------------
 1 file changed, 9 insertions(+), 50 deletions(-)

(limited to 'check.log')

diff --git a/check.log b/check.log
index f6ee39db..2627695d 100644
--- a/check.log
+++ b/check.log
@@ -41,38 +41,14 @@ Maintainer: ‘Johannes Ranke <jranke@uni-bremen.de>’
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... NOTE
-saemix_model: no visible global function definition for
-  ‘packageVersion’
-Undefined global functions or variables:
-  packageVersion
-Consider adding
-  importFrom("utils", "packageVersion")
-to your NAMESPACE file.
+* checking R code for possible problems ... OK
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
-* checking Rd cross-references ... WARNING
-Missing link or links in documentation object 'nlmixr.mmkin.Rd':
-  ‘nlmix_model’ ‘summary.nlmixr.mmkin’
-
-See section 'Cross-references' in the 'Writing R Extensions' manual.
+* checking Rd cross-references ... OK
 * checking for missing documentation entries ... OK
 * checking for code/documentation mismatches ... OK
-* checking Rd \usage sections ... WARNING
-Undocumented arguments in documentation object 'mean_degparms'
-  ‘object’
-
-Undocumented arguments in documentation object 'nlmixr.mmkin'
-  ‘data’ ‘table’ ‘error_model’ ‘save’ ‘envir’
-Documented arguments not in \usage in documentation object 'nlmixr.mmkin':
-  ‘solution_type’
-
-Functions with \usage entries need to have the appropriate \alias
-entries, and all their arguments documented.
-The \usage entries must correspond to syntactically valid R code.
-See chapter ‘Writing R documentation files’ in the ‘Writing R
-Extensions’ manual.
+* checking Rd \usage sections ... OK
 * checking Rd contents ... OK
 * checking for unstated dependencies in examples ... OK
 * checking contents of ‘data’ directory ... OK
@@ -81,28 +57,10 @@ Extensions’ manual.
 * checking data for ASCII and uncompressed saves ... OK
 * checking installed files from ‘inst/doc’ ... OK
 * checking files in ‘vignettes’ ... OK
-* checking examples ... ERROR
-Running examples in ‘mkin-Ex.R’ failed
-The error most likely occurred in:
-
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
-> ### Name: nlmixr.mmkin
-> ### Title: Fit nonlinear mixed models using nlmixr
-> ### Aliases: nlmixr.mmkin print.nlmixr.mmkin nlmixr_model nlmixr_data
-> 
-> ### ** Examples
-> 
-> ds <- lapply(experimental_data_for_UBA_2019[6:10],
-+  function(x) subset(x$data[c("name", "time", "value")]))
-> names(ds) <- paste("Dataset", 6:10)
-> f_mmkin_parent <- mmkin(c("SFO", "FOMC", "DFOP", "HS"), ds, quiet = TRUE, cores = 1)
-> f_mmkin_parent_tc <- mmkin(c("SFO", "FOMC", "DFOP"), ds, error_model = "tc", 
-+   cores = 1, quiet = TRUE)
-> 
-> f_nlmixr_sfo_saem <- nlmixr(f_mmkin_parent["SFO", ], est = "saem")
-Error in nlmixr(f_mmkin_parent["SFO", ], est = "saem") : 
-  could not find function "nlmixr"
-Execution halted
+* checking examples ... NOTE
+Examples with CPU (user + system) or elapsed time > 5s
+              user system elapsed
+nlmixr.mmkin 8.129  0.375   5.384
 * checking for unstated dependencies in ‘tests’ ... OK
 * checking tests ... SKIPPED
 * checking for unstated dependencies in vignettes ... OK
@@ -113,8 +71,9 @@ Execution halted
 * checking for detritus in the temp directory ... OK
 * DONE
 
-Status: 1 ERROR, 2 WARNINGs, 1 NOTE
+Status: 1 NOTE
 See
   ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’
 for details.
 
+
-- 
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