From 70591022c07f0e8fb4dd67789b7c8d78af8ebc18 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Thu, 2 May 2019 13:17:05 +0200
Subject: Better initials for error model parameters

- Also make it possible to specify initial values for error model
parameters.
- Run tests
- Rebuild docs
---
 docs/articles/FOCUS_D.html | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

(limited to 'docs/articles/FOCUS_D.html')

diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index e63feb07..0ae6a391 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -88,7 +88,7 @@
       <h1>Example evaluation of FOCUS Example Dataset D</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2019-04-10</h4>
+            <h4 class="date">2019-05-02</h4>
       
       
       <div class="hidden name"><code>FOCUS_D.Rmd</code></div>
@@ -167,9 +167,9 @@
 <p>A comprehensive report of the results is obtained using the <code>summary</code> method for <code>mkinfit</code> objects.</p>
 <div class="sourceCode" id="cb11"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb11-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.49.4 
-## R version used for fitting:       3.5.3 
-## Date of fit:     Wed Apr 10 10:11:31 2019 
-## Date of summary: Wed Apr 10 10:11:31 2019 
+## R version used for fitting:       3.6.0 
+## Date of fit:     Thu May  2 12:40:29 2019 
+## Date of summary: Thu May  2 12:40:29 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -177,10 +177,10 @@
 ## 
 ## Model predictions using solution type deSolve 
 ## 
-## Fitted with method using 396 model solutions performed in 1.048 s
+## Fitted using 396 model solutions performed in 1.048 s
 ## 
 ## Error model:
-## NULL
+## Constant variance 
 ## 
 ## Starting values for parameters to be optimised:
 ##                    value   type
@@ -235,7 +235,7 @@
 ## k_m1_sink      0.005261   7.510 6.165e-09  0.004012 6.898e-03
 ## sigma          3.126000   8.718 2.235e-10  2.396000 3.855e+00
 ## 
-## Chi2 error levels in percent:
+## FOCUS Chi2 error levels in percent:
 ##          err.min n.optim df
 ## All data   6.398       4 15
 ## parent     6.827       3  6
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