From 373d98038c514c5152478127a8a2b9b390ee1b58 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sun, 14 Jan 2018 18:37:07 +0100 Subject: Load mkin quietly in vignettes Static documentation articles rebuilt by pkgdown::build_articles() --- docs/articles/FOCUS_L.html | 72 +++++++++++++++++++++++----------------------- 1 file changed, 36 insertions(+), 36 deletions(-) (limited to 'docs/articles/FOCUS_L.html') diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index 7cef7abd..bc2b9947 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -77,7 +77,7 @@

Example evaluation of FOCUS Laboratory Data L1 to L3

Johannes Ranke

-

2017-11-16

+

2018-01-14

@@ -98,17 +98,17 @@ FOCUS_2006_L1_mkin <- for parent only degradation models. The following two lines fit the model and produce the summary report of the model fit. This covers the numerical analysis given in the FOCUS report.

m.L1.SFO <- mkinfit("SFO", FOCUS_2006_L1_mkin, quiet = TRUE)
 summary(m.L1.SFO)
-
## mkin version:    0.9.46.2 
-## R version:       3.4.2 
-## Date of fit:     Thu Nov 16 17:12:46 2017 
-## Date of summary: Thu Nov 16 17:12:46 2017 
+
## mkin version:    0.9.47.1 
+## R version:       3.4.3 
+## Date of fit:     Sun Jan 14 18:36:12 2018 
+## Date of summary: Sun Jan 14 18:36:12 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.253 s
+## Fitted with method Port using 37 model solutions performed in 0.258 s
 ## 
 ## Weighting: none
 ## 
@@ -191,10 +191,10 @@ FOCUS_2006_L1_mkin <- 
plot(m.L1.FOMC, show_errmin = TRUE, main = "FOCUS L1 - FOMC")

 

 
summary(m.L1.FOMC, data = FALSE)

-
## mkin version:    0.9.46.2 
-## R version:       3.4.2 
-## Date of fit:     Thu Nov 16 17:12:47 2017 
-## Date of summary: Thu Nov 16 17:12:47 2017 
+
## mkin version:    0.9.47.1 
+## R version:       3.4.3 
+## Date of fit:     Sun Jan 14 18:36:13 2018 
+## Date of summary: Sun Jan 14 18:36:13 2018 
 ## 
 ## 
 ## Warning: Optimisation by method Port did not converge.
@@ -206,7 +206,7 @@ FOCUS_2006_L1_mkin <-  main = "FOCUS L2 - FOMC")

 

 
summary(m.L2.FOMC, data = FALSE)

-
## mkin version:    0.9.46.2 
-## R version:       3.4.2 
-## Date of fit:     Thu Nov 16 17:12:48 2017 
-## Date of summary: Thu Nov 16 17:12:48 2017 
+
## mkin version:    0.9.47.1 
+## R version:       3.4.3 
+## Date of fit:     Sun Jan 14 18:36:14 2018 
+## Date of summary: Sun Jan 14 18:36:14 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.183 s
+## Fitted with method Port using 81 model solutions performed in 0.177 s
 ## 
 ## Weighting: none
 ## 
@@ -362,10 +362,10 @@ FOCUS_2006_L2_mkin <- main = "FOCUS L2 - DFOP")

 

 
summary(m.L2.DFOP, data = FALSE)

-
## mkin version:    0.9.46.2 
-## R version:       3.4.2 
-## Date of fit:     Thu Nov 16 17:12:49 2017 
-## Date of summary: Thu Nov 16 17:12:49 2017 
+
## mkin version:    0.9.47.1 
+## R version:       3.4.3 
+## Date of fit:     Sun Jan 14 18:36:15 2018 
+## Date of summary: Sun Jan 14 18:36:15 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -374,7 +374,7 @@ FOCUS_2006_L2_mkin <-  
summary(mm.L3[["DFOP", 1]])

-
## mkin version:    0.9.46.2 
-## R version:       3.4.2 
-## Date of fit:     Thu Nov 16 17:12:50 2017 
-## Date of summary: Thu Nov 16 17:12:50 2017 
+
## mkin version:    0.9.47.1 
+## R version:       3.4.3 
+## Date of fit:     Sun Jan 14 18:36:16 2018 
+## Date of summary: Sun Jan 14 18:36:16 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -466,7 +466,7 @@ mm.L3 <-  

 
The \(\chi^2\) error level of 3.3% as well as the plot suggest that the SFO model fits very well. The error level at which the \(\chi^2\) test passes is slightly lower for the FOMC model. However, the difference appears negligible.

 
summary(mm.L4[["SFO", 1]], data = FALSE)

-
## mkin version:    0.9.46.2 
-## R version:       3.4.2 
-## Date of fit:     Thu Nov 16 17:12:50 2017 
-## Date of summary: Thu Nov 16 17:12:51 2017 
+
## mkin version:    0.9.47.1 
+## R version:       3.4.3 
+## Date of fit:     Sun Jan 14 18:36:16 2018 
+## Date of summary: Sun Jan 14 18:36:17 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.098 s
+## Fitted with method Port using 46 model solutions performed in 0.097 s
 ## 
 ## Weighting: none
 ## 
@@ -615,17 +615,17 @@ mm.L4 <- 
summary(mm.L4[["FOMC", 1]], data = FALSE)

-
## mkin version:    0.9.46.2 
-## R version:       3.4.2 
-## Date of fit:     Thu Nov 16 17:12:51 2017 
-## Date of summary: Thu Nov 16 17:12:51 2017 
+
## mkin version:    0.9.47.1 
+## R version:       3.4.3 
+## Date of fit:     Sun Jan 14 18:36:17 2018 
+## Date of summary: Sun Jan 14 18:36:17 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.136 s
+## Fitted with method Port using 66 model solutions performed in 0.138 s
 ## 
 ## Weighting: none
 ## 
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