From 3a5463672c297b37c3c9135c8b144c48744c05d0 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 31 Mar 2021 19:42:17 +0200 Subject: Bug fix in plot.mkinfit In residual plots, use xlab and xlim if appropriate --- docs/articles/FOCUS_L.html | 62 +++++++++++++++++++++++----------------------- 1 file changed, 31 insertions(+), 31 deletions(-) (limited to 'docs/articles/FOCUS_L.html') diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index ab9739bc..7074816c 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -31,7 +31,7 @@ mkin - 1.0.3 + 1.0.4 @@ -94,13 +94,13 @@ -
+

Example evaluation of FOCUS Laboratory Data L1 to L3

Johannes Ranke

-

Last change 17 November 2016 (rebuilt 2021-02-15)

+

Last change 17 November 2016 (rebuilt 2021-03-31)

Source: vignettes/FOCUS_L.rmd @@ -126,10 +126,10 @@ 
 m.L1.SFO <- mkinfit("SFO", FOCUS_2006_L1_mkin, quiet = TRUE)
 summary(m.L1.SFO)
-
## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:30 2021 
-## Date of summary: Mon Feb 15 17:50:30 2021 
+
## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:31 2021 
+## Date of summary: Wed Mar 31 19:18:31 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent * parent
@@ -232,10 +232,10 @@
 
## Warning in sqrt(1/diag(V)): NaNs produced

 
## Warning in cov2cor(ans$covar): diag(.) had 0 or NA entries; non-finite result is
 ## doubtful

-
## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:31 2021 
-## Date of summary: Mon Feb 15 17:50:31 2021 
+
## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:32 2021 
+## Date of summary: Wed Mar 31 19:18:32 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
@@ -344,10 +344,10 @@
 

 
 summary(m.L2.FOMC, data = FALSE)

-
## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:31 2021 
-## Date of summary: Mon Feb 15 17:50:31 2021 
+
## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:32 2021 
+## Date of summary: Wed Mar 31 19:18:32 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
@@ -425,10 +425,10 @@
 

 
 summary(m.L2.DFOP, data = FALSE)

-
## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:32 2021 
-## Date of summary: Mon Feb 15 17:50:32 2021 
+
## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:33 2021 
+## Date of summary: Wed Mar 31 19:18:33 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -531,10 +531,10 @@
 
We can extract the summary and plot for e.g. the DFOP fit, using square brackets for indexing which will result in the use of the summary and plot functions working on mkinfit objects.

 
 summary(mm.L3[["DFOP", 1]])

-
## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:32 2021 
-## Date of summary: Mon Feb 15 17:50:32 2021 
+
## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:33 2021 
+## Date of summary: Wed Mar 31 19:18:33 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -644,10 +644,10 @@
 
The \(\chi^2\) error level of 3.3% as well as the plot suggest that the SFO model fits very well. The error level at which the \(\chi^2\) test passes is slightly lower for the FOMC model. However, the difference appears negligible.

 
 summary(mm.L4[["SFO", 1]], data = FALSE)

-
## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:33 2021 
-## Date of summary: Mon Feb 15 17:50:33 2021 
+
## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:34 2021 
+## Date of summary: Wed Mar 31 19:18:34 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent * parent
@@ -709,10 +709,10 @@
 ## parent  106  352

 
 summary(mm.L4[["FOMC", 1]], data = FALSE)

-
## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:33 2021 
-## Date of summary: Mon Feb 15 17:50:33 2021 
+
## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:34 2021 
+## Date of summary: Wed Mar 31 19:18:34 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
-- 
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