From c58ccd73951b2000a7a254fb36bbd9f0733db6cd Mon Sep 17 00:00:00 2001
From: Johannes Ranke <johannes.ranke@jrwb.de>
Date: Mon, 12 May 2025 22:16:10 +0200
Subject: Check and test locally

---
 docs/articles/FOCUS_L.html | 66 +++++++++++++++++++++++-----------------------
 1 file changed, 33 insertions(+), 33 deletions(-)

(limited to 'docs/articles/FOCUS_L.html')

diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index 30092709..85d82a27 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -20,7 +20,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">mkin</a>
 
-    <small class="nav-text text-default me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="Released version">1.2.9</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="Released version">1.2.10</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -84,7 +84,7 @@
 Ranke</h4>
             
             <h4 data-toc-skip class="date">Last change 18 May 2023
-(rebuilt 2025-02-13)</h4>
+(rebuilt 2025-05-12)</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/FOCUS_L.rmd" class="external-link"><code>vignettes/FOCUS_L.rmd</code></a></small>
       <div class="d-none name"><code>FOCUS_L.rmd</code></div>
@@ -117,10 +117,10 @@ report.</p>
 <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">m.L1.SFO</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="va">FOCUS_2006_L1_mkin</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
 <span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">m.L1.SFO</span><span class="op">)</span></span></code></pre></div>
-<pre><code><span><span class="co">## mkin version used for fitting:    1.2.9 </span></span>
-<span><span class="co">## R version used for fitting:       4.4.2 </span></span>
-<span><span class="co">## Date of fit:     Thu Feb 13 15:49:54 2025 </span></span>
-<span><span class="co">## Date of summary: Thu Feb 13 15:49:54 2025 </span></span>
+<pre><code><span><span class="co">## mkin version used for fitting:    1.2.10 </span></span>
+<span><span class="co">## R version used for fitting:       4.5.0 </span></span>
+<span><span class="co">## Date of fit:     Mon May 12 21:54:26 2025 </span></span>
+<span><span class="co">## Date of summary: Mon May 12 21:54:26 2025 </span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Equations:</span></span>
 <span><span class="co">## d_parent/dt = - k_parent * parent</span></span>
@@ -225,17 +225,17 @@ error level is checked.</p>
 <pre><code><span><span class="co">## Warning in sqrt(diag(covar)): NaNs produced</span></span></code></pre>
 <pre><code><span><span class="co">## Warning in cov2cor(ans$covar): diag(V) had non-positive or NA entries; the</span></span>
 <span><span class="co">## non-finite result may be dubious</span></span></code></pre>
-<pre><code><span><span class="co">## mkin version used for fitting:    1.2.9 </span></span>
-<span><span class="co">## R version used for fitting:       4.4.2 </span></span>
-<span><span class="co">## Date of fit:     Thu Feb 13 15:49:55 2025 </span></span>
-<span><span class="co">## Date of summary: Thu Feb 13 15:49:55 2025 </span></span>
+<pre><code><span><span class="co">## mkin version used for fitting:    1.2.10 </span></span>
+<span><span class="co">## R version used for fitting:       4.5.0 </span></span>
+<span><span class="co">## Date of fit:     Mon May 12 21:54:26 2025 </span></span>
+<span><span class="co">## Date of summary: Mon May 12 21:54:26 2025 </span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Equations:</span></span>
 <span><span class="co">## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent</span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Model predictions using solution type analytical </span></span>
 <span><span class="co">## </span></span>
-<span><span class="co">## Fitted using 342 model solutions performed in 0.023 s</span></span>
+<span><span class="co">## Fitted using 342 model solutions performed in 0.024 s</span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Error model: Constant variance </span></span>
 <span><span class="co">## </span></span>
@@ -383,10 +383,10 @@ error level is checked.</p>
 <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-9-1.png" width="672"></p>
 <div class="sourceCode" id="cb16"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">m.L2.FOMC</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div>
-<pre><code><span><span class="co">## mkin version used for fitting:    1.2.9 </span></span>
-<span><span class="co">## R version used for fitting:       4.4.2 </span></span>
-<span><span class="co">## Date of fit:     Thu Feb 13 15:49:55 2025 </span></span>
-<span><span class="co">## Date of summary: Thu Feb 13 15:49:55 2025 </span></span>
+<pre><code><span><span class="co">## mkin version used for fitting:    1.2.10 </span></span>
+<span><span class="co">## R version used for fitting:       4.5.0 </span></span>
+<span><span class="co">## Date of fit:     Mon May 12 21:54:26 2025 </span></span>
+<span><span class="co">## Date of summary: Mon May 12 21:54:26 2025 </span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Equations:</span></span>
 <span><span class="co">## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent</span></span>
@@ -470,10 +470,10 @@ error level.</p>
 <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-10-1.png" width="672"></p>
 <div class="sourceCode" id="cb19"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">m.L2.DFOP</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div>
-<pre><code><span><span class="co">## mkin version used for fitting:    1.2.9 </span></span>
-<span><span class="co">## R version used for fitting:       4.4.2 </span></span>
-<span><span class="co">## Date of fit:     Thu Feb 13 15:49:55 2025 </span></span>
-<span><span class="co">## Date of summary: Thu Feb 13 15:49:55 2025 </span></span>
+<pre><code><span><span class="co">## mkin version used for fitting:    1.2.10 </span></span>
+<span><span class="co">## R version used for fitting:       4.5.0 </span></span>
+<span><span class="co">## Date of fit:     Mon May 12 21:54:27 2025 </span></span>
+<span><span class="co">## Date of summary: Mon May 12 21:54:27 2025 </span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Equations:</span></span>
 <span><span class="co">## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *</span></span>
@@ -593,10 +593,10 @@ using square brackets for indexing which will result in the use of the
 summary and plot functions working on mkinfit objects.</p>
 <div class="sourceCode" id="cb23"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">mm.L3</span><span class="op">[[</span><span class="st">"DFOP"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span><span class="op">)</span></span></code></pre></div>
-<pre><code><span><span class="co">## mkin version used for fitting:    1.2.9 </span></span>
-<span><span class="co">## R version used for fitting:       4.4.2 </span></span>
-<span><span class="co">## Date of fit:     Thu Feb 13 15:49:56 2025 </span></span>
-<span><span class="co">## Date of summary: Thu Feb 13 15:49:56 2025 </span></span>
+<pre><code><span><span class="co">## mkin version used for fitting:    1.2.10 </span></span>
+<span><span class="co">## R version used for fitting:       4.5.0 </span></span>
+<span><span class="co">## Date of fit:     Mon May 12 21:54:27 2025 </span></span>
+<span><span class="co">## Date of summary: Mon May 12 21:54:27 2025 </span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Equations:</span></span>
 <span><span class="co">## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *</span></span>
@@ -723,17 +723,17 @@ test passes is slightly lower for the FOMC model. However, the
 difference appears negligible.</p>
 <div class="sourceCode" id="cb28"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">mm.L4</span><span class="op">[[</span><span class="st">"SFO"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div>
-<pre><code><span><span class="co">## mkin version used for fitting:    1.2.9 </span></span>
-<span><span class="co">## R version used for fitting:       4.4.2 </span></span>
-<span><span class="co">## Date of fit:     Thu Feb 13 15:49:56 2025 </span></span>
-<span><span class="co">## Date of summary: Thu Feb 13 15:49:56 2025 </span></span>
+<pre><code><span><span class="co">## mkin version used for fitting:    1.2.10 </span></span>
+<span><span class="co">## R version used for fitting:       4.5.0 </span></span>
+<span><span class="co">## Date of fit:     Mon May 12 21:54:27 2025 </span></span>
+<span><span class="co">## Date of summary: Mon May 12 21:54:28 2025 </span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Equations:</span></span>
 <span><span class="co">## d_parent/dt = - k_parent * parent</span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Model predictions using solution type analytical </span></span>
 <span><span class="co">## </span></span>
-<span><span class="co">## Fitted using 142 model solutions performed in 0.009 s</span></span>
+<span><span class="co">## Fitted using 142 model solutions performed in 0.01 s</span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Error model: Constant variance </span></span>
 <span><span class="co">## </span></span>
@@ -788,17 +788,17 @@ difference appears negligible.</p>
 <span><span class="co">## parent  106  352</span></span></code></pre>
 <div class="sourceCode" id="cb30"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">mm.L4</span><span class="op">[[</span><span class="st">"FOMC"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div>
-<pre><code><span><span class="co">## mkin version used for fitting:    1.2.9 </span></span>
-<span><span class="co">## R version used for fitting:       4.4.2 </span></span>
-<span><span class="co">## Date of fit:     Thu Feb 13 15:49:56 2025 </span></span>
-<span><span class="co">## Date of summary: Thu Feb 13 15:49:56 2025 </span></span>
+<pre><code><span><span class="co">## mkin version used for fitting:    1.2.10 </span></span>
+<span><span class="co">## R version used for fitting:       4.5.0 </span></span>
+<span><span class="co">## Date of fit:     Mon May 12 21:54:27 2025 </span></span>
+<span><span class="co">## Date of summary: Mon May 12 21:54:28 2025 </span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Equations:</span></span>
 <span><span class="co">## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent</span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Model predictions using solution type analytical </span></span>
 <span><span class="co">## </span></span>
-<span><span class="co">## Fitted using 224 model solutions performed in 0.013 s</span></span>
+<span><span class="co">## Fitted using 224 model solutions performed in 0.014 s</span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## Error model: Constant variance </span></span>
 <span><span class="co">## </span></span>
-- 
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