From dd65f3503e9d091c82aedcf91635fcf40f778bf9 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 14 Sep 2018 06:41:44 +0200 Subject: Static documentation rebuilt by pkgdown Also update test log --- docs/articles/FOCUS_L.html | 60 +++++++++++++++++++++++----------------------- 1 file changed, 30 insertions(+), 30 deletions(-) (limited to 'docs/articles/FOCUS_L.html') diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index a42c6e38..f7bbf961 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -29,7 +29,7 @@ mkin - 0.9.47.2 + 0.9.47.3 @@ -84,7 +84,7 @@

Example evaluation of FOCUS Laboratory Data L1 to L3

Johannes Ranke

-

2018-09-06

+

2018-09-14

@@ -108,17 +108,17 @@

Since mkin version 0.9-32 (July 2014), we can use shorthand notation like "SFO" for parent only degradation models. The following two lines fit the model and produce the summary report of the model fit. This covers the numerical analysis given in the FOCUS report.

m.L1.SFO <- mkinfit("SFO", FOCUS_2006_L1_mkin, quiet = TRUE)
 summary(m.L1.SFO)
-
## mkin version used for fitting:    0.9.47.2 
+
## mkin version used for fitting:    0.9.47.3 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Thu Sep  6 13:35:50 2018 
-## Date of summary: Thu Sep  6 13:35:50 2018 
+## Date of fit:     Fri Sep 14 06:39:28 2018 
+## Date of summary: Fri Sep 14 06:39:28 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.086 s
+## Fitted with method Port using 37 model solutions performed in 0.091 s
 ## 
 ## Weighting: none
 ## 
@@ -199,17 +199,17 @@
 plot(m.L1.FOMC, show_errmin = TRUE, main = "FOCUS L1 - FOMC")

 

 
-
## mkin version used for fitting:    0.9.47.2 
+
## mkin version used for fitting:    0.9.47.3 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Thu Sep  6 13:35:52 2018 
-## Date of summary: Thu Sep  6 13:35:52 2018 
+## Date of fit:     Fri Sep 14 06:39:30 2018 
+## Date of summary: Fri Sep 14 06:39:30 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.35 s
+## Fitted with method Port using 611 model solutions performed in 1.333 s
 ## 
 ## Weighting: none
 ## 
@@ -294,17 +294,17 @@
      main = "FOCUS L2 - FOMC")

 

 
-
## mkin version used for fitting:    0.9.47.2 
+
## mkin version used for fitting:    0.9.47.3 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Thu Sep  6 13:35:52 2018 
-## Date of summary: Thu Sep  6 13:35:53 2018 
+## Date of fit:     Fri Sep 14 06:39:30 2018 
+## Date of summary: Fri Sep 14 06:39:30 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.175 s
+## Fitted with method Port using 81 model solutions performed in 0.172 s
 ## 
 ## Weighting: none
 ## 
@@ -365,10 +365,10 @@
      main = "FOCUS L2 - DFOP")

 

 
-
## mkin version used for fitting:    0.9.47.2 
+
## mkin version used for fitting:    0.9.47.3 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Thu Sep  6 13:35:53 2018 
-## Date of summary: Thu Sep  6 13:35:53 2018 
+## Date of fit:     Fri Sep 14 06:39:31 2018 
+## Date of summary: Fri Sep 14 06:39:31 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.746 s
+## Fitted with method Port using 336 model solutions performed in 0.742 s
 ## 
 ## Weighting: none
 ## 
@@ -457,10 +457,10 @@
 
The objects returned by mmkin are arranged like a matrix, with models as a row index and datasets as a column index.

 
We can extract the summary and plot for e.g. the DFOP fit, using square brackets for indexing which will result in the use of the summary and plot functions working on mkinfit objects.

 
-
## mkin version used for fitting:    0.9.47.2 
+
## mkin version used for fitting:    0.9.47.3 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Thu Sep  6 13:35:54 2018 
-## Date of summary: Thu Sep  6 13:35:55 2018 
+## Date of fit:     Fri Sep 14 06:39:32 2018 
+## Date of summary: Fri Sep 14 06:39:32 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -469,7 +469,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.324 s
+## Fitted with method Port using 137 model solutions performed in 0.312 s
 ## 
 ## Weighting: none
 ## 
@@ -558,17 +558,17 @@
 

 
The \(\chi^2\) error level of 3.3% as well as the plot suggest that the SFO model fits very well. The error level at which the \(\chi^2\) test passes is slightly lower for the FOMC model. However, the difference appears negligible.

 
-
## mkin version used for fitting:    0.9.47.2 
+
## mkin version used for fitting:    0.9.47.3 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Thu Sep  6 13:35:55 2018 
-## Date of summary: Thu Sep  6 13:35:55 2018 
+## Date of fit:     Fri Sep 14 06:39:33 2018 
+## Date of summary: Fri Sep 14 06:39:33 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.107 s
+## Fitted with method Port using 46 model solutions performed in 0.097 s
 ## 
 ## Weighting: none
 ## 
@@ -618,17 +618,17 @@
 ##        DT50 DT90
 ## parent  106  352

 
-
## mkin version used for fitting:    0.9.47.2 
+
## mkin version used for fitting:    0.9.47.3 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Thu Sep  6 13:35:55 2018 
-## Date of summary: Thu Sep  6 13:35:55 2018 
+## Date of fit:     Fri Sep 14 06:39:33 2018 
+## Date of summary: Fri Sep 14 06:39:33 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.161 s
+## Fitted with method Port using 66 model solutions performed in 0.143 s
 ## 
 ## Weighting: none
 ## 
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