From 373d98038c514c5152478127a8a2b9b390ee1b58 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Sun, 14 Jan 2018 18:37:07 +0100
Subject: Load mkin quietly in vignettes

Static documentation articles rebuilt by pkgdown::build_articles()
---
 docs/articles/compiled_models.html | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

(limited to 'docs/articles/compiled_models.html')

diff --git a/docs/articles/compiled_models.html b/docs/articles/compiled_models.html
index 68aa1bac..4c850d14 100644
--- a/docs/articles/compiled_models.html
+++ b/docs/articles/compiled_models.html
@@ -77,7 +77,7 @@
       <h1>Performance benefit by using compiled model definitions in mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2017-11-16</h4>
+            <h4 class="date">2018-01-14</h4>
           </div>
 
     
@@ -91,7 +91,7 @@
 <pre><code>##            gcc 
 ## "/usr/bin/gcc"</code></pre>
 <p>First, we build a simple degradation model for a parent compound with one metabolite.</p>
-<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(<span class="st">"mkin"</span>)
+<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(<span class="st">"mkin"</span>, <span class="dt">quietly =</span> <span class="ot">TRUE</span>)
 SFO_SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mkinmod.html">mkinmod</a></span>(
   <span class="dt">parent =</span> <span class="kw"><a href="../reference/mkinsub.html">mkinsub</a></span>(<span class="st">"SFO"</span>, <span class="st">"m1"</span>),
   <span class="dt">m1 =</span> <span class="kw"><a href="../reference/mkinsub.html">mkinsub</a></span>(<span class="st">"SFO"</span>))</code></pre></div>
@@ -115,9 +115,9 @@ SFO_SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mki
 }</code></pre></div>
 <pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   2.029    1.000     2.028        0
-## 1 deSolve, not compiled            3  14.237    7.017    14.236        0
-## 2      Eigenvalue based            3   2.700    1.331     2.700        0
+## 3     deSolve, compiled            3   2.083    1.000     2.084    0.000
+## 1 deSolve, not compiled            3  14.501    6.962    14.472    0.016
+## 2      Eigenvalue based            3   2.566    1.232     2.564    0.000
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -146,14 +146,14 @@ SFO_SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mki
 }</code></pre></div>
 <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   3.495    1.000     3.496        0
-## 1 deSolve, not compiled            3  29.264    8.373    29.260        0
+## 2     deSolve, compiled            3   3.534    1.000     3.532    0.000
+## 1 deSolve, not compiled            3  29.973    8.481    29.960    0.004
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0</code></pre>
 <p>Here we get a performance benefit of a factor of 8 using the version of the differential equation model compiled from C code!</p>
-<p>This vignette was built with mkin 0.9.46.2 on</p>
-<pre><code>## R version 3.4.2 (2017-09-28)
+<p>This vignette was built with mkin 0.9.47.1 on</p>
+<pre><code>## R version 3.4.3 (2017-11-30)
 ## Platform: x86_64-pc-linux-gnu (64-bit)
 ## Running under: Debian GNU/Linux 9 (stretch)</code></pre>
 <pre><code>## CPU model: Intel(R) Core(TM) i7-4710MQ CPU @ 2.50GHz</code></pre>
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